74474-8

Middle East respiratory syndrome coronavirus (MERS-CoV) upE gene RNA [Presence] in Specimen by NAA with probe detection

Active

Term Description

Real-time PCR is performed to detect the presence of MERS-CoV RNA in respiratory specimens (nasopharyngeal, oropharyngeal swabs, sputum, lower respiratory aspirates/washes), serum, and stool. This code was created for, but not limited in use to, the submitter's primer and probe set, NCV-2012 rRT-PCR (CDC; Catalog #KT0136), which targets the nucleocapsid protein gene (NCV.N2 and NCV.N3) and upstream the MERS-CoV envelope protein gene (NCV.upE).

Part Description

LP175713-9 Middle East respiratory syndrome coronavirus upE gene
The Middle East respiratory syndrome coronavirus (MERS-CoV), also termed NCV-2012, EMC/2012 or SARS-like virus, is a Betacoronavirus, a novel coronavirus (nCoV). Coronaviruses commonly cause respiratory illnesses, including the common cold, but the MERS-CoV is more lethal. The first MERS-CoV case was reported in September 2012 in the Middle East. Testing is currently (2013) restricted to patients exhibiting the clinical symptoms of MERS-CoV infection and having the epidemiological risk factors. Several highly sensitive, confirmatory real-time RT-PCR assays exist for rapid identification of MERS-CoV from patient samples (such as bronchoalveolar lavage or sputum). Targets include upE (targets elements upstream of the E gene), 1A (targets the ORF1a gene) and nucleocapsid protein genes (specific to MERS-CoV). Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, MERS-CoV (Wikipedia)

LOINC Names Get Info

Fully-Specified Name: Middle east respiratory syndrome coronavirus upE gene RNA:PrThr:Pt:XXX:Ord:Probe.amp.tar
Long Common Name: Middle East respiratory syndrome coronavirus (MERS-CoV) upE gene RNA [Presence] in Specimen by NAA with probe detection
Short Name: MERS-CoV upE RNA Spec Ql NAA+probe
Display Name: MERS-CoV upE gene RNA NAA+probe Ql (Specimen)
Consumer Name Alpha Get Info: Middle East respiratory syndrome coronavirus (MERS-CoV), Specimen

Part Model Get Info

Component
Middle East respiratory syndrome coronavirus upE gene RNA
LP175712-1
- Analyte
  Middle East respiratory syndrome coronavirus upE gene RNA
  LP175712-1
  - Component Numerator
    Middle East respiratory syndrome coronavirus upE gene RNA
    LP175712-1
    - Component Numerator Core
      Middle East respiratory syndrome coronavirus upE gene
      LP175713-9
    - Component Numerator Core Suffix
      RNA
      LP32423-3
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
PrThr
LP217195-9
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
XXX
LP7735-6
- System Core
  XXX
  LP7735-6
- Super System
  NULL
Scale
Ord
LP7751-3
Method
Probe.amp.tar
LP6464-4

Example Answer List: LL744-4

Source: Regenstrief Institute

Answer	Code	Score	Answer ID
Detected			LA11882-0
Not detected			LA11883-8

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.46
Last Updated: Version 2.69 (MIN)
Change Reason: The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation: Both

Member of these Panels

LOINC	Long Common Name
74408-6	Middle East respiratory syndrome coronavirus (MERS-CoV) RNA panel - Specimen

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	Koronavirus způsobující blízkovýchodní respirační syndrom (MERS-CoV) gen upE RNA:Přítomnost nebo práh:Časový bod:XXX:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
de-DE	German (Germany)	Middle East respiratory syndrome Coronavirus (MERS CoV) upE-Gen RNA:Nachweis oder Schwellenwert:Zeitpunkt:XXX:Ordinal:Zielfragmentamplifikation mit Sondendetektion
el-GR	Greek (Greece)	Γονίδιο upE του κορωνοϊού του αναπνευστικού συνδρόμου της Μέσης Ανατολής RNA:PrThr:Pt:XXX:Ord:Ανιχνευτής.ενίσχυση.στόχου Synonyms: MICRO Ord PrThr Pt RNA XXX Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο upE του κορωνοϊού του αναπνευστικού συνδρόμου της Μέσης Ανατολής Κορωνοϊός Κορωνοϊός του αναπνευστικού συνδρόμου της Μέσης Ανατολής
es-ES	Spanish (Spain)	Gen del sindrome respiratorio por Coronavirus de Oriente medio proteína E RNA:PrThr:Punto temporal:XXX:Ord:Sonda con amplificación dirigida
es-MX	Spanish (Mexico)	Síndrome respiratorio de Oriente Medio coronavirus gen upE ARN:Presencia o umbral:Punto temporal:XXX:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR	French (France)	Coronavirus MERS gène upE ARN:Présence/Seuil:Ponctuel:Milieux divers:Qualitatif:PCR amplification de cible
it-IT	Italian (Italy)	Sindrome respiratoria mediorientale da Coronavirus (MERS), gene upE RNA:PrThr:Pt:XXX:Ord:Sonda.amp.tar Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL	Dutch (Netherlands)	Middle East Respiratory Syndrome-coronavirus upE-gen RNA:aanwezigheid:moment:XXX:ordinaal:probe-detectie Synonyms: MERS-coronavirus MERS-coronavirus upE-gen probe.amp.tar
pl-PL	Polish (Poland)	Koronawirus bliskowschodniego zespołu oddechowego gen upE RNA:granica wykrywalności:punkt w czasie:XXX:uporządkowany:sonda.amplifikacja.cel Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen upE koronawirusa bliskowschodniego zespołu oddechowego (MERS-CoV) Koronawirus Koronawirus bliskowschodniego zespołu oddechowego (MERS-CoV) RNA genu upE koronawirusa bliskowschodniego zespołu oddechowego (MERS-CoV)
pt-BR	Portuguese (Brazil)	Medio Oriente sindrome respiratória coronavírus upE gene RNA:Limiar:Pt:XXX:Ord:Sonda com limite de detecção da amplificação de alvo
ru-RU	Russian (Russian Federation)	Ближневосточный респираторный синдром коронавирус upE ген РНК:PrThr:ТчкВрм:XXX:Пор:Проба.усил.миш Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR	Turkish (Turkey)	Orta doğu respiratuvar koronovirüs (MERS-CoV) upE geni RNA:MevcEşik:Zmlı:XXX:Srl:Prob.amf.hdf Synonyms: Mevcut
zh-CN	Chinese (China)	中东呼吸综合征冠状病毒 upE 基因 RNA:存在情况或阈值:时间点:XXX:序数型:探针法.基因扩增.靶向 Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项中东呼吸道综合征冠状病毒;中东呼吸系统综合征冠状病毒;中東呼吸症候群冠狀病毒;MERS-CoV;MERSCoV;Middle east respiratory syndrome coronavirus;中东呼吸综合症冠状病毒依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值）微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间核糖核酸;Ribonucleic acid 经过扩增的脱氧核糖核酸探针遗传基因;遗传因子;吉恩;生物基因

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LOINC Copyright

Copyright © Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.