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Status Information

Status
DEPRECATED
Reason
Duplicate
Comment
The "Probe.mag capture" Method has been deprecated and replaced with the more general "Probe" Method since the "mag capture" portion represents how the nucleic acids are isolated, which is not a distinction made in the LOINC Method for molecular tests. Given that updating the Method would change the meaning of the term, a new term was created to replace the existing term as recommended by the Special Topics workgroup on PCR-based Methods and approved by the LOINC Lab Committee at the June 2017 meeting.
Map-ToLong Common NameMapping Guidance
88258-9Escherichia coli oppA gene [Presence] by Probe in Positive blood culture

Term Description

Magnetic beads and fluorescent probes are used to capture and detect targeted nucleic acid sequences specific to Escherichia coli species within the oppA gene in positive blood culture. The oppA gene encodes "oligopeptide ABC transporter periplasmic binding protein", an ATP-dependent oligopeptide transporter that is a member of the ATP-Binding Cassette (ABC) Superfamily of transporters. This term is based on, but not limited in use to Nanosphere's Verigene Gram-Negative Blood Culture test, which reports specimens containing Shigella spp. and/or E. coli as "E. coli Detected".

Part Description

LP183540-6   Probe.mag capture
Nucleic acid is first concentrated and purified using a bead-based method, followed by a oligonucleotide probe detection of sequence of interest with signal enhancement. Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Escherichia coli (oppA) gene:PrThr:Pt:Bld.pos growth:Ord:Probe.mag capture
Long Common Name
Deprecated Escherichia coli (oppA) gene [Presence] by Nucleic acid capture and probe detection in Positive blood culture
Short Name
Deprecated E coli oppA Bld Pos Ql Prb Mag
Display Name
E. coli oppA gene Nucleic acid capture and probe detection Ql (Pos bld culture)
Consumer Name Alpha Get Info
Escherichia coli (oppA) gene, Infected blood

Part Model Get Info

  • Component
    Escherichia coli (oppA) gene
    LP269003-2
    • Analyte
      Escherichia coli (oppA) gene
      LP269003-2
      • Component Numerator
        Escherichia coli (oppA) gene
        LP269003-2
        • Component Numerator Core
          Escherichia coli (oppA) gene
          LP269003-2
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Bld.pos growth
    LP183539-8
    • System Core
      Bld.pos growth
      LP183539-8
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Probe.mag capture
    LP183540-6

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.50
Last Updated
Version 2.63 (DEL)
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Escherichia coli gen oppA:Přítomnost nebo práh:Časový bod:Krev pozitivní kultivace:Ordinální:Hybridizace s magnetickým záchytem
el-GRGreek (Greece)Γονίδιο (oppA) του κολοβακτηριδίου Escherichia coli:PrThr:Pt:Αίμα.θετική ανάπτυξη:Ord:Ανιχνευτής.μαγνητική σύλληψη
Synonyms: Escherichia coli (Κολοβακτηρίδιο) MICRO Ord PrThr Pt Αίμα Αίμα.θετική ανάπτυξη Ανιχνευτής Ανιχνευτής.μαγνητική σύλληψη Γονίδιο Γονίδιο (oppA) του κολοβακτηριδίου Escherichia coli Γονίδιο oppA του Escherichia coli
es-MXSpanish (Mexico)Gen oppA de Escherichia coli:Presencia o umbral:Punto temporal:Hemocultivo positivo:Ordinal:Hibridación de captura magnética
fr-FRFrench (France)Escherichia coli oppA gène:Présence/Seuil:Ponctuel:Hémoculture positive:Qualitatif:Sonde de capture magnétique
it-ITItalian (Italy)Escherichia coli (oppA), gene:PrThr:Pt:Emocolture positive:Ord:Sonda.cattura mag
Synonyms: Gene escherichia coli (oppA) Gene oppA Escherichia coli Ibridizzazione cattura magnetica Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sangue Sonda di DNA
zh-CNChinese (China)大肠埃希菌 (oppA) 基因:存在情况或阈值:时间点:血液.生长阳性:序数型:探针.磁捕获
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） (oppA) 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） oppA 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 磁捕获杂交法;磁性捕获杂交法;磁力捕获杂交法;Magnetic capture hybridization 脱氧核糖核酸探针 血;血液 血液.阳性生长;血培养阳性;阳性血培养;阳性血液培养;全血.生长阳性 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=75678-3