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Term Description

This term was created for, but is not limited in use to, Pathogenius Laboratories' Level 1 Wound and/or ENT test panels, which use quantitative PCR to identify commonly-found microorganisms in wound or ear, nose, and throat samples, respectively.

Part Description

LP185673-3   Streptococcus pneumoniae nanA gene
The nanA gene is common across all strains of Streptococcus pneumoniae and encodes a sialidase protein (also known as neuraminidase) that plays an important role in the virulence of this pathogen. Because the nanA gene is conserved across all strains, its presence in clinical specimens can be used to identify Streptococcus pneumoniae as one of the pathogens responsible for a specific infection. PMID: 22963456 Source: Regenstrief LOINC, PMID: 22963456

LOINC Names Get Info

Fully-Specified Name
Streptococcus pneumoniae nanA gene:PrThr:Pt:XXX.swab:Ord:Probe.amp.tar
Long Common Name
Streptococcus pneumoniae nanA gene [Presence] in Swab specimen by NAA with probe detection
Short Name
S pneum nanA Swab Ql NAA+probe
Display Name
S. pneumoniae nanA gene NAA+probe Ql (Swab specimen)
Consumer Name Alpha Get Info
Streptococcus pneumoniae nanA gene, Swab specimen

Part Model Get Info

  • Component
    Streptococcus pneumoniae nanA gene
    LP185673-3
    • Analyte
      Streptococcus pneumoniae nanA gene
      LP185673-3
      • Component Numerator
        Streptococcus pneumoniae nanA gene
        LP185673-3
        • Component Numerator Core
          Streptococcus pneumoniae nanA gene
          LP185673-3
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    XXX.swab
    LP189536-8
  • Scale
    Ord
    LP7751-3
  • Method
    Probe.amp.tar
    LP6464-4

Example Answer List: LL2994-3

Source: Bioinfomatics Research and Testing Laboratory
AnswerCodeScoreAnswer ID
Low (< 10^5 bacteria)LA21375-3
Medium (10^5-10^7 bacteria)LA21374-6
High (> 10^7 bacteria)LA21373-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.52
Last Updated
Version 2.71 (MIN)
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Member of these Panels

LOINCLong Common Name
76586-7ENT microorganism gene identification panel by NAA with probe detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Streptococcus pneumoniae gen nanA:Přítomnost nebo práh:Časový bod:Výtěr:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
el-GRGreek (Greece)Γονίδιο nanA του Streptococcus pneumoniae (Στρεπτόκοκκος πνευμονίας):PrThr:Pt:XXX.επίχρισμα:Ord:Ανιχνευτής.ενίσχυση.στόχου
Synonyms: MICRO Ord PrThr Pt Streptococcus pneumoniae (Στρεπτόκοκκος πνευμονίας) XXX XXX.επίχρισμα Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο nanA του Streptococcus pneumoniae (Στρεπτόκοκκος πνευμονίας)
es-ESSpanish (Spain)gen nanA Streptococcus pneumoniae:PrThr:Punto temporal:Escobillon XXX:Ord:Sonda con amplificación dirigida
es-MXSpanish (Mexico)Gen nanA de Streptococo pneumoniae:Presencia o umbral:Punto temporal:XXX.swab:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FRFrench (France)Streptococcus pneumoniae gène nanA:Présence/Seuil:Ponctuel:Prélèvement divers:Qualitatif:PCR amplification de cible
it-ITItalian (Italy)Streptococcus pneumoniae, gene nanA:PrThr:Pt:XXX.tampone:Ord:Sonda.amp.tar
Synonyms: Gene nanA di Streptococcus pneumoniae Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
pl-PLPolish (Poland)Streptococcus pneumoniae nanA gen:granica wykrywalności:punkt w czasie:XXX.wymaz:uporządkowany:sonda.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Dwoinka zapalenia płuc;pneumokok Gen nanA Streptococcus pneumoniae
tr-TRTurkish (Turkey)Streptococcus pneumoniae nanA geni:MevcEşik:Zmlı:XXX.sürüntü:Srl:Prob.amf.hdf
Synonyms: Mevcut
zh-CNChinese (China)肺炎链球菌 nanA 基因:存在情况或阈值:时间点:XXX.拭子:序数型:探针法.基因扩增.靶向
Synonyms: XXX.拭子（拭样、采样刷、样品刷、药签、棉签）;未作说明的（此处不作说明的、不明）体系（标本、样品、样本、试样、系统）.拭子 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 球菌肺炎;肺双;肺炎双球菌;肺炎球菌;肺链;链球菌肺炎 经过扩增的 肺炎链球菌 nanA 毒力基因 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=76572-7