76584-2

Enterococcus faecalis cpn60 gene [Presence] in Swab specimen by NAA with probe detection

Active

Term Description

This term was created for, but is not limited in use to, Pathogenius Laboratories' Level 1 Wound and/or ENT test panels, which use quantitative PCR to identify commonly-found microorganisms in wound or ear, nose, and throat samples, respectively.

Part Description

LP185689-9 Enterococcus faecalis cpn60 gene
Enterococci species are common pathogens in hospital-acquired infections, including urinary tract infections and surgical wound infections. The sodA gene is conserved across enterococcus species, but the variability of a specific internal sodA sequence can be used to differentiate between enterococcus species. A particular sodA sequence identifies Enterococcus faecium, and the identification of this sequence in a clinical specimen can be used to identify E faecium as the pathogen responsible for a particular infection. PMID: 10618129 Likewise, the cpn60 gene is conserved across many bacterial genera, but it also contains an internal sequence with enough variation to distinguish among different enterococcus species. Identification of a particular cpn60 sequence in a clinical specimen has been used to identify Enterococcus faecalis as a causative infectious organism. PMID: 11060051 Source: Regenstrief LOINC, PMID: 10618129

LOINC Names Get Info

Fully-Specified Name: Enterococcus faecalis cpn60 gene:PrThr:Pt:XXX.swab:Ord:Probe.amp.tar
Long Common Name: Enterococcus faecalis cpn60 gene [Presence] in Swab specimen by NAA with probe detection
Short Name: E faecal cpn60 Swab Ql NAA+probe
Display Name: E. faecalis cpn60 gene NAA+probe Ql (Swab specimen)
Consumer Name Alpha Get Info: Enterococcus faecalis cpn60 gene, Swab specimen

Part Model Get Info

Component
Enterococcus faecalis cpn60 gene
LP185689-9
- Analyte
  Enterococcus faecalis cpn60 gene
  LP185689-9
  - Component Numerator
    Enterococcus faecalis cpn60 gene
    LP185689-9
    - Component Numerator Core
      Enterococcus faecalis cpn60 gene
      LP185689-9
    - Component Numerator Core Suffix
      NULL
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
PrThr
LP217195-9
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
XXX.swab
LP189536-8
- System Core
  XXX.swab
  LP189536-8
- Super System
  NULL
Scale
Ord
LP7751-3
Method
Probe.amp.tar
LP6464-4

Example Answer List: LL2994-3

Source: Bioinfomatics Research and Testing Laboratory

Answer	Code	Score	Answer ID
Low (< 10^5 bacteria)			LA21375-3
Medium (10^5-10^7 bacteria)			LA21374-6
High (> 10^7 bacteria)			LA21373-8

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.52
Last Updated: Version 2.71 (MIN)
Change Reason: The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation: Observation

Member of these Panels

LOINC	Long Common Name
76585-9	Wound microorganism gene identification panel by NAA with probe detection

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	Enterococcus faecalis gen cpn60:Přítomnost nebo práh:Časový bod:Výtěr:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
el-GR	Greek (Greece)	Γονίδιο cpn60 του Enterococcus faecalis (Εντερόκοκκος):PrThr:Pt:XXX.επίχρισμα:Ord:Ανιχνευτής.ενίσχυση.στόχου Synonyms: Enterococcus faecalis (Εντερόκοκκος) MICRO Ord PrThr Pt XXX XXX.επίχρισμα Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο cpn60 του Enterococcus faecalis (Εντερόκοκκος)
es-ES	Spanish (Spain)	gen cpn60 Enterococcus faecalis:PrThr:Punto temporal:Escobillon XXX:Ord:Sonda con amplificación dirigida
es-MX	Spanish (Mexico)	Gen cpn60 de Enterococo faecalis:Presencia o umbral:Punto temporal:XXX.swab:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR	French (France)	Enterococcus faecalis cpn60 gène:Présence/Seuil:Ponctuel:Prélèvement divers:Qualitatif:PCR amplification de cible
it-IT	Italian (Italy)	Enterococcus faecalis cpn60, gene:PrThr:Pt:XXX.tampone:Ord:Sonda.amp.tar Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
pl-PL	Polish (Poland)	Enterococcus faecalis cpn60 gen:granica wykrywalności:punkt w czasie:XXX.wymaz:uporządkowany:sonda.amplifikacja.cel Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen cpn60 Enterococcus faecalis
tr-TR	Turkish (Turkey)	Enterococcus faecalis cpn60 geni:MevcEşik:Zmlı:XXX.sürüntü:Srl:Prob.amf.hdf Synonyms: Mevcut
zh-CN	Chinese (China)	粪肠球菌 cpn60 基因:存在情况或阈值:时间点:XXX.拭子:序数型:探针法.基因扩增.靶向 Synonyms: XXX.拭子（拭样、采样刷、样品刷、药签、棉签）;未作说明的（此处不作说明的、不明）体系（标本、样品、样本、试样、系统）.拭子不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值）微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间经过扩增的肠球菌属肠道球菌脱氧核糖核酸探针遗传基因;遗传因子;吉恩;生物基因

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CodeSystem lookup: https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=76584-2

LOINC Copyright

Copyright © Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.