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Term Description

This term was created for, but is not limited in use to, the Vysis RARA Break Apart FISH Probe Kit, which is intended to detect rearrangements involving the RARA gene at chromosome region 17q21.

Part Descriptions

LP189757-0   RARA gene rearrangements
The RARA gene (retinoic acid receptor, alpha) [HGNC Gene ID:9864] is located on chromosome 17q21. This gene represents a nuclear retinoic acid receptor. The encoded protein, retinoic acid receptor alpha, regulates transcription in a ligand-dependent manner. This gene has been implicated in regulation of development, differentiation, apoptosis, granulopoeisis, and transcription of clock genes. Translocations between this locus and several other loci have been associated with acute promyelocytic leukemia. Alternatively spliced transcript variants have been found for this locus.[provided by RefSeq, Sep 2010] [NCBI Gene ID: 5914] Source: National Center for Biotechnology Information (NCBI) Gene

LP62864-1   FISH
FISH (fluorescence in situ hybridization) is a cytogenetic technique used to detect and localize the presence or absence of specific DNA sequences on chromosomes. FISH uses fluorescent probes that bind to only those parts of the chromosome with which they show a high degree of sequence similarity. Fluorescence microscopy can be used to find out where the fluorescent probe bound to the chromosomes. FISH is often used for finding specific features in DNA for use in genetic counseling, medicine, and species identification. FISH can also be used to detect and localize specific mRNAs within tissue samples. In this context, it can help define the spatial-temporal patterns of gene expression within cells and tissues. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, FISH

LOINC Names Get Info

Fully-Specified Name
RARA gene rearrangements:PrThr:Pt:Bld/Tiss:Ord:FISH
Long Common Name
RARA gene rearrangements [Presence] in Blood or Tissue by FISH
Short Name
RARA rearrange Bld/T Ql FISH
Display Name
RARA rearrangements FISH Ql (Bld/Tiss)
Consumer Name Alpha Get Info
RARA rearrangements, Blood or tissue specimen

Part Model Get Info

  • Component
    RARA gene rearrangements
    LP189757-0
    • Analyte
      RARA gene rearrangements
      LP189757-0
      • Component Numerator
        RARA gene rearrangements
        LP189757-0
        • Component Numerator Core
          RARA gene rearrangements
          LP189757-0
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Bld/Tiss
    LP7061-7
    • System Core
      Bld/Tiss
      LP7061-7
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    FISH
    LP62864-1

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MOLPATH.REARRANGE
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.61 (MIN)
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Gen RARA přestavba:Přítomnost nebo práh:Časový bod:Krev/tkáň:Ordinální:Fluorescenční in situ hybridizace (FISH)
el-GRGreek (Greece)Γονιδιακές αναδιατάξεις RARA:PrThr:Pt:Αίμα/Ιστός:Ord:Φθορίζουσα υβριδοποίηση in situ
Synonyms: MOLPATH MOLPATH.REARRANGE Ord PrThr Pt Αίμα Αίμα/Ιστός Γονιδιακές αναδιατάξεις RARA Γονίδιο Ιστός Φθορίζουσα υβριδοποίηση in situ
es-ESSpanish (Spain)Reordenamientos del gen RARA:PrThr:Punto temporal:Sangre o tejido:Ord:Hibridación in situ fluoresente (FISH)
es-MXSpanish (Mexico)Reordenamientos del gen RARA:Presencia o umbral:Punto temporal:Sangre o tejido:Ordinal:Hibridación fluorescente in situ (FISH)
fr-FRFrench (France)RARA gène réarrangements:Présence/Seuil:Ponctuel:Sang/Tissu:Qualitatif:FISH
it-ITItalian (Italy)riarrangiamenti del gene RARA:PrThr:Pt:Sangue/Tess:Ord:FISH
Synonyms: Ibridazione in situ fluorescente (FISH) Patologia molecolare Presenza o Soglia Punto nel tempo (episodio) riarrangiamenti del gene del recettore alfa dell'' Riarrangiamento genico Sangue Sangue o Tessuto Tessuto & Strisci
nl-NLDutch (Netherlands)RARA-genherschikking:aanwezigheid:moment:bloed of weefsel:ordinaal:FISH
Synonyms: RARA-gentranslocaties
pl-PLPolish (Poland)RARA gen rearanżacje:granica wykrywalności:punkt w czasie:krew lub tkanka:uporządkowany:FISH
Synonyms: fluorescencyjna hybrydyzacja in situ Rearanżacje genu RARA
tr-TRTurkish (Turkey)RARA geni yeniden düzenleme:MevcEşik:Zmlı:Kan/Dk:Srl:FISH
Synonyms: Mevcut
zh-CNChinese (China)RARA 基因重排:存在情况或阈值:时间点:全血/组织:序数型:FISH
Synonyms: Fluorescent in situ hybridization;荧光原位杂交 NR1B1 RAR alpha 型 RAR α型 RARA 基因重排（重组） RARalpha RARα 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 全血或组织;血液/组织;血液或组织 分子病理学.基因重排;分子病理学.重排;分子病理学试验.基因重排;分子病理学试验.重排;分子病理学试验类.重排;基因重排;重排 分子病理学;分子病理学试验 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 时刻;随机;随意;瞬间 未作说明的组织;组织;组织 & 涂片 血;血液 视黄酸受体 alpha 视黄酸受体 alpha（Retinoic acid receptor alpha，RARA，RARalpha，RAR alpha） 视黄酸受体 α 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=78217-7