81122-4

HIV 1 RNA reverse transcriptase and protease gene [Nucleotide sequence] in Serum, Plasma or Blood by Sequencing

Active

Term Description

This term is used to report the nucleotide sequence of the HIV-1 reverse transcriptase and protease genes based on viral RNA. The specific regions that are sequenced and reporting format may vary by laboratory and local reporting requirements. This term was created for, but is not limited in use to, the submitter's ViroSeq HIV-1 Genotyping System, which includes generation of a 1.3 kb consensus sequence based on sequencing of the entire protease and two-thirds of the reverse transcriptase genes.

Part Description

LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name: HIV 1 RNA reverse transcriptase & protease gene:Seq:Pt:Ser/Plas/Bld:Nom:Sequencing
Long Common Name: HIV 1 RNA reverse transcriptase and protease gene [Nucleotide sequence] in Serum, Plasma or Blood by Sequencing
Short Name: HIV 1 RNA RT + PR Seq SerPlBld
Display Name: HIV 1 RNA reverse transcriptase and protease gene sequence Nom (S/P/Bld)
Consumer Name Alpha Get Info: HIV 1 RNA Reverse Transcriptase and Protease gene, Blood

Part Model Get Info

Component
HIV 1 RNA reverse transcriptase & protease gene
LP208626-4
- Analyte
  HIV 1 RNA reverse transcriptase & protease gene
  LP208626-4
  - Component Numerator
    HIV 1 RNA reverse transcriptase & protease gene
    LP208626-4
    - Component Numerator Core
      HIV 1 RNA reverse transcriptase & protease gene
      LP208626-4
    - Component Numerator Core Suffix
      NULL
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
Seq
LP62164-6
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
Ser/Plas/Bld
LP7579-8
- System Core
  Ser/Plas/Bld
  LP7579-8
- Super System
  NULL
Scale
Nom
LP7750-5
Method
Sequencing
LP150045-5

Basic Attributes

Class: ABXBACT
Type: Laboratory
First Released: Version 2.56
Last Updated: Version 2.65 (MIN)
Change Reason: Updated the System to Ser/Plas/Bld to reflect the specimens used to run the test.
Order vs. Observation: Both

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	Gen HIV 1 RNA reverzní transkriptáza+proteáza:Nukleotidová sekvence:Časový bod:Sérum/plazma/krev:Nominální:Sekvenace
de-DE	German (Germany)	HIV-1 RNA Reverse-Transkriptase- & Protease-Gen:Sequenz:Zeitpunkt:Serum, Plasma oder Blut:Nominal:Sequenzierung
el-GR	Greek (Greece)	Γονίδιο αντίστροφης μεταγραφάσης & πρωτεάσης RNA του ιού της ανθρώπινης ανοσοανεπάρκειας 1:Seq:Pt:Ορός/Πλάσμα/Αίμα:Nom:Αλληλούχιση Synonyms: ABXBACT HIV 1 Nom Pt RNA RNA ιού της ανθρώπινης ανοσοανεπάρκειας 1 Seq Αίμα Αλληλούχιση Γονίδιο Γονίδιο αντίστροφης μεταγραφάσης & πρωτεάσης RNA του ιού της ανθρώπινης ανοσοανεπάρκειας 1 Ιός ανθρώπινης ανοσοανεπάρκειας Ορός Ορός/Πλάσμα Ορός/Πλάσμα/Αίμα Πλάσμα Πλάσμα/Αίμα
es-ES	Spanish (Spain)	Gen de la proteasa y transcriptas inversa del RNA del VIH 1:Secuencia de nucleótidos:Punto temporal:Suero, Plasma o Sangre:Nom:Secuenciación
es-MX	Spanish (Mexico)	Transcriptasa inversa del ARN del VIH 1 y gen de la proteasa:Secuencia de nucleótidos:Punto temporal:Suero, plasma o sangre:Nominal:Secuenciación
fr-FR	French (France)	VIH-1 ARN gènes reverse transcriptase et protéase:Séquence nucléotidique:Ponctuel:Sérum/Plasma/Sang:Résultat nominal:Séquençage
it-IT	Italian (Italy)	HIV 1 proviral,RNA gene trascrittasi inversa& proteasi:Seq:Pt:Siero/Plasma/Sangue,Siero,Plasma o Sangue:Nom:Sequenziamento Synonyms: Plasma Plasma o Sangue Punto nel tempo (episodio) RNA dell''HIV 1 Sangue Sequenza nucleotidica Siero Siero o Plasma Suscettibilità agli antibiotici
nl-NL	Dutch (Netherlands)	HIV 1 RNA reverse transcriptase & protease gen:nucleotidevolgorde:moment:serum of plasma of bloed:nominaal:sequencing
pl-PL	Polish (Poland)	HIV 1 RNA gen odwrotnej transkryptazy & proteazy:sekwencja nukleotydów:punkt w czasie:surowica, osocze lub krew:skala nominalna:sekwencjonowanie Synonyms: Gen odwrotnej transkryptazy i proteazy ludzkiego wirusa niedoboru odporności typu 1 RNA Ludzki wirus niedoboru odporności Ludzki wirus niedoboru odporności typu 1 osocze lub krew RNA ludzkiego wirusa niedoboru odporności typu 1 wynik kategorialny
zh-CN	Chinese (China)	HIV 1 型 RNA 逆转录酶与蛋白酶基因:序列:时间点:血清/血浆/全血:名义型:序列测定 Synonyms: Ⅰ AIDS;AIDS 病毒;人类免疫缺陷病毒;人类免疫缺陷病毒（Human immunodeficiency virus，HIV）;爱滋病;艾滋病;艾滋病病毒;获得性免疫缺陷综合征;获得性免疫缺陷综合征（Acquired Immure Deficiency Syndrome，AIDS，艾滋病） HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型） RNA（核糖核酸）逆转录酶（反转录酶、逆录酶、RT）与蛋白酶（Prot）基因 HIV1 RNA HIV1;HTLV 3;HTLV III;人类免疫缺陷病毒 1 型;人类免疫缺陷病毒 I 型;HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型） I RT RTase 倒倒的倒转倒转的分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答反向反向的反常反常的反的反相反相的反转录酶序列分析;测序抗生素敏感性试验;药敏;药敏类;药敏试验;药敏试验类时刻;随机;随意;瞬间朊酶核糖核酸;Ribonucleic acid 核苷酸序列相反相反的蛋白质酵素血;血液血浆或全血;血浆/血液;血浆或血液血清、血浆或全血;血清、血浆或血液;血清/血浆/血液血清或血浆逆逆的逆转录酶（Reverse transcriptase，RT）遗传基因;遗传因子;吉恩;生物基因颠倒颠倒的

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Copyright © Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.