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Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP248015-2   Porcine reproductive and respiratory syndrome virus whole genome
Porcine reproductive and respiratory syndrome virus (PRRSV) affects swine production worldwide. The PRRSV genome contains approximately 15,400 nucleotides and is divided into two genotypes, North American (type 2, with prototype isolate VR2332) and European (type 1, with prototype isolate "Lelystad" isolate). Studies have shown that the genetic diversity of the PRRSV genome arises mainly from a few highly variable regions, such as the segments of open reading frame 1a (ORF1a) coding for nonstructural proteins 1 and 2 and the structural proteins encoded by ORF3-5. The other regions of the viral genome are less variable.
PMID: 24371078 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Porcine reproductive and respiratory syndrome virus whole genome:Seq:Pt:Isolate:Nom:Sequencing
Long Common Name
PRRSV whole genome [Nucleotide sequence] in Isolate by Sequencing
Short Name
PRRSV whole genome Islt-Seq
Display Name
PRRSV whole genome sequence Nom (Isol)
Consumer Name Alpha Get Info
PRRSV whole genome

Part Model Get Info

  • Component
    Porcine reproductive and respiratory syndrome virus whole genome
    LP248015-2
    • Analyte
      Porcine reproductive and respiratory syndrome virus whole genome
      LP248015-2
      • Component Numerator
        Porcine reproductive and respiratory syndrome virus whole genome
        LP248015-2
        • Component Numerator Core
          Porcine reproductive and respiratory syndrome virus whole genome
          LP248015-2
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.61
Last Updated
Version 2.64 (MIN)
Change Reason
Abbreviated "Porcine reproductive and respiratory syndrome virus" to "PRRSV" in the Long Common Name. PRRSV is shorter and more commonly used in test names.
Order vs. Observation
Observation

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)PRRSV celý genom:Nukleotidová sekvence:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Ολόκληρο γονιδίωμα του Ευρωπαϊκού στελέχους του ιού του αναπαραγωγικού και αναπνευστικού συνδρόμου των χοίρων:Seq:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Nom Pt Seq Αλληλούχιση Απομονωμένο στέλεχος Ιός Ιός του αναπαραγωγικού και αναπνευστικού συνδρόμου των χοίρων Ολόκληρο γονιδίωμα του Ευρωπαϊκού στελέχους του ιού του αναπαραγωγικού και αναπνευστικού συνδρόμου των χοίρων Των χοίρων
es-ESSpanish (Spain)Genoma completo del Virus del sindrome reproductivo y respiratorio porcino:Secuencia de nucleótidos:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Genoma completo del virus del síndrome respiratorio y reproductivo porcino:Secuencia de nucleótidos:Punto temporal:Aislado:Nominal:Secuenciación
it-ITItalian (Italy)Virus della sindrome riproduttiva e respiratoria del suino, intero genoma:Seq:Pt:Isolato:Nom:Sequenziamento
Synonyms: Intero genoma virus PRRS Microbiologia Punto nel tempo (episodio) Sequenza nucleotidica Virus PRRS
nl-NLDutch (Netherlands)'porcine' reproductief en respiratoir syndroomvirus geheel genoom:nucleotidevolgorde:moment:isolaat:nominaal:sequencing
Synonyms: porcine voortplantings- en respiratoir syndroom virus van varken; PRRSV
pl-PLPolish (Poland)Wirus zespołu rozrodczo-oddechowego świń pełny genom:sekwencja nukleotydów:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: PRRSV pełny genom wynik kategorialny
zh-CNChinese (China)猪生殖与呼吸综合征病毒全基因组:序列:时间点:分离株:名义型:序列测定
Synonyms: Lelystad 病毒;PRRS;SIRSV;兰耳病;新猪病;母猪后期流产;猪不育和呼吸综合症;猪不育和呼吸综合症（Swine infertility and respiratory syndrome，SIRSV）;猪生殖与呼吸系统综合症;猪生殖与呼吸综合症（Porcine reproductive and respiratory syndrome，PRRS）;猪繁殖与呼吸综合征;猪蓝耳病;猪蓝色病;神秘仔猪病;神秘猪病;莱利斯塔猪病毒（Lelystad Virus，LV）;蓝耳猪病;蓝耳病;蓝色流产症 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核苷酸序列 猪生殖与呼吸综合征病毒全（完整、全部）基因组;PRRSV;猪生殖呼吸综合征病毒;猪呼吸繁殖综合征病毒;猪繁殖与呼吸道综合征病毒;猪繁殖和呼吸障碍综合征;Porcine Reproductive and Respiratory Syndrome;PRRS;蓝耳病;Blue Ear Disease 猪的 猪科 猪科的

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=85531-2