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Term Description

This term is used to report the sequence of the whole Senecavirus A genome.

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP249711-5   Senecavirus A whole genome
Senecavirus A (SVA), formerly Seneca Valley virus (SVV) is a small, non-enveloped picornavirus. Other members of this family are foot-and-mouth disease virus and swine vesicular disease virus. SVA is the causative agent of an emerging vesicular disease in swine (2017) and has been associated with neonatal mortality in piglets. The genomic sequences of 3 United States isolates were determined and found to be 7,266 nucleotides (nt) in length. The three isolates have similar genomic organization to previously described SVA isolates, namely, 5′ untranslated region (UTR), a single open reading frame (ORF), and 3′ UTR. The polyprotein translated from the single ORF is predicted to be cleaved into four structural proteins (VP4, VP2, VP3, and VP1) and seven nonstructural proteins (2A, 2B, 2C, 3A, 3B, 3C, and 3D). PMID: 26564033 SVA has also been idenfied in mice and houseflies which implicates them in playing a role in epidemiology of the disease. PMID: 27030489. The clinical signs of SVA include coronary, snout and/or oral mucosa band vesicles, acute lameness, anorexia, lethargy and fever. SVA is present in the United States, Canada, Australia, Italy, New Zealand and Brazil. PMID: 28394893 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Senecavirus A whole genome:Seq:Pt:Isolate:Nom:Sequencing
Long Common Name
Senecavirus A whole genome [Nucleotide sequence] in Isolate by Sequencing
Short Name
SVA whole genome Islt-Seq
Display Name
Senecavirus A whole genome sequence Nom (Isol)
Consumer Name Alpha Get Info
Senecavirus A Whole Genome

Part Model Get Info

  • Component
    Senecavirus A whole genome
    LP249711-5
    • Analyte
      Senecavirus A whole genome
      LP249711-5
      • Component Numerator
        Senecavirus A whole genome
        LP249711-5
        • Component Numerator Core
          Senecavirus A whole genome
          LP249711-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.63 (ADD)
Order vs. Observation
Observation

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Senecavirus A celý genom:Nukleotidová sekvence:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Ολόκληρο γονιδίωμα του Senecavirus A:Seq:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: A MICRO Nom Pt Senecavirus A Seq Αλληλούχιση Απομονωμένο στέλεχος Ολόκληρο γονιδίωμα του Senecavirus A
es-ESSpanish (Spain)Genoma completo senecavirus A:Secuencia de nucleótidos:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Senecavirus Un genoma completo:Secuencia de nucleótidos:Punto temporal:Aislado:Nominal:Secuenciación
fr-FRFrench (France)Senecavirus A génome entier:Séquence nucléotidique:Ponctuel:Isolat:Résultat nominal:Séquençage
it-ITItalian (Italy)Senecavirus A, intero genoma:Seq:Pt:Isolato:Nom:Sequenziamento
Synonyms: Intero genoma senecavirus A Microbiologia Punto nel tempo (episodio) Sequenza nucleotidica
nl-NLDutch (Netherlands)Senecavirus A geheel genoom:nucleotidevolgorde:moment:isolaat:nominaal:sequencing
pl-PLPolish (Poland)Wirus Seneca A cały genom:sekwencja nukleotydów:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: Cały genom wirusa Seneca A wynik kategorialny
zh-CNChinese (China)塞内卡病毒 A 全基因组:序列:时间点:分离株:名义型:序列测定
Synonyms: A 型 A型塞内卡病毒;SVA;塞内卡山谷病毒;Seneca Valley virus;新生仔猪死亡有关的病原体 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 塞内卡病毒 A（A型塞内卡病毒、SVA、塞内卡山谷病毒、Seneca Valley virus） 全（完整、全部）基因组 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核苷酸序列

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=87352-1