Log In

Term Description

This term is used to report the nucleotide base sequence.

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP262415-5   Porcine parainfluenza virus 1 F gene
Veterinary Medicine:
Porcine parainfluenza virus 1 (PPIV1) is an enveloped, non-segmented, single-stranded RNA virus found only in domestic pigs. PPIV1 was first identified in Hong Kong in samples collected between 2008 and 2012. In 2013, the virus was discovered in clinical specimens of pigs with respiratory disease in the United States. There have been no known infections of PPIV1 in humans. PPIV1 is transmitted in respiratory secretions and symptoms of infection include lethargy, coughing and sneezing with serous nasal discharge. Pigs less than 21 days old are most likely to be symptomatic when infected. Some asymptomatic pigs have tested positive for the virus. PPIV1 has not been cultured in cells but it can be seen in respiratory tissue using in situ hybridization and quantified using RT-PCR assays. Assays that identify antibodies to PPIV1 include immunoprecipitation coupled with PCR detection (ICPD) and indirect enzyme-linked immunosorbent assay using a recombinant fusion (F) protein peptide (PPIV1 F ELISA). There are currently no vaccines for PPIV1 available.http://www.cfsph.iastate.edu/pdf/shic-factsheet-porcine-parainfluenza-virus-1The fusion F protein mediates the union and penetration of the virus into the cell. PMID: 16007245 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Porcine parainfluenza virus 1 F gene:Seq:Pt:Isolate:Nom:Sequencing
Long Common Name
Porcine parainfluenza virus 1 F gene [Nucleotide sequence] in Isolate by Sequencing
Short Name
PPIV1 F Islt-Seq
Display Name
Porcine parainfluenza virus 1 F gene sequence Nom (Isol)
Consumer Name Alpha Get Info
Porcine Parainfluenza virus 1 F gene

Part Model Get Info

  • Component
    Porcine parainfluenza virus 1 F gene
    LP262415-5
    • Analyte
      Porcine parainfluenza virus 1 F gene
      LP262415-5
      • Component Numerator
        Porcine parainfluenza virus 1 F gene
        LP262415-5
        • Component Numerator Core
          Porcine parainfluenza virus 1 F gene
          LP262415-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.64 (MIN)
Change Reason
Updated "P parainfl 1" in Shortname to "PPIV1", the more common abbreviation and for consistency across terms.
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Virus prasečí parainfluenzy 1 gen F:Nukleotidová sekvence:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Γονίδιο 1 F ιού παραγρίπης των χοίρων:Seq:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Nom Pt Seq Αλληλούχιση Απομονωμένο στέλεχος Γονίδιο Γονίδιο 1 F ιού παραγρίπης Γονίδιο 1 F ιού παραγρίπης των χοίρων Ιός Ιός παραγρίπης Ιός παραγρίπης 1 Ιός παραγρίπης των χοίρων 1 Των χοίρων
es-ESSpanish (Spain)Gen F parainfluenza virus porcino 1:Secuencia de nucleótidos:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Gen F del virus de la parainfluenza porcina 1:Secuencia de nucleótidos:Punto temporal:Aislado:Nominal:Secuenciación
it-ITItalian (Italy)Parainfluenza suina virus 1, gene F:Seq:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Punto nel tempo (episodio) Sequenza nucleotidica Virus parainfluenza 1 gene F Virus parainfluenzale Virus parainfluenzale di tipo 1
nl-NLDutch (Netherlands)varkensparainfluenzavirus 1 F-gen:nucleotidevolgorde:moment:isolaat:nominaal:sequencing
Synonyms: Parainfluenza virus 1 F gen porcine ''porcine'' parainfluenzavirus 1
pl-PLPolish (Poland)Świński wirus paragrypy typ 1 gen F:sekwencja nukleotydów:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: Gen białka F wirusa paragrypy typu 1 Paragrypa typ 1 wynik kategorialny
zh-CNChinese (China)猪副流感病毒 1 F 基因:序列:时间点:分离株:名义型:序列测定
Synonyms: Ⅰ HPIV;类流感病毒 HPIV1;PI1;副流感病毒 I 型 I 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 副流感病毒 副流感病毒（类流感病毒、HPIV） 1 型 F 基因 副流感菌 副流行性感冒 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核苷酸序列 猪的 猪科 猪科的 类流感 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=87385-1