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Part Descriptions

LP14494-6   Brachyspira sp
Veterinary Medicine:
Several species of the gram-negative spirochete Brachyspira can cause swine dysentery (SD) including B. hyodysenteriae, B. intermedia, B. innocens, B. murdochii, B. aalborgi, B. alvinipulli, B. suanatina, and a provisional species called Brachyspira hampsonii. B. hyodysenteriae, B. suanatina, and B. hampsonii cause a severe mucohaemorrhagic colitis found mainly in grower and finisher pigs. Brachyspira that are weakly heamolytic causing a mild colitis include B. murdochii, B. intermedia, B. aalborgi, and B. alvinipulli in pigs, chickens and humans. Transmission of Brachyspira sp can occur in several ways including: pigs that have subclinical infection; infection from birds or feral animals that act as potential reservoirs; reduced immunity in a herd; routine diagnostic and control measures are not adhered to; and environmental changes such as a change in diet, co-infections and other stresses that increase norepinephrine levels in the gut that can result in the growth and colonization of some species of Brachyspira. Diagnoses of Brachyspira species are primarily made using polymerase chain reaction (PCR) test and/or immune staining. PMID: 11015363 https://porcinehealthmanagement.biomedcentral.com/articles/10.1186/s40813-015-0002-1 PMID: 27629903 Source: Regenstrief LOINC

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Brachyspira sp:Type:Pt:Isolate:Nom:Sequencing
Long Common Name
Brachyspira sp [Type] in Isolate by Sequencing
Short Name
Brachyspira Islt Seq
Display Name
Brachyspira sp Sequencing Nom (Isol)
Consumer Name Alpha Get Info
Brachyspira sp

Part Model Get Info

  • Component
    Brachyspira sp
    LP14494-6
    • Analyte
      Brachyspira sp
      LP14494-6
      • Component Numerator
        Brachyspira sp
        LP14494-6
        • Component Numerator Core
          Brachyspira sp
          LP14494-6
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Type
    LP6886-8
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL4633-5

AnswerCodeScoreAnswer ID
Brachyspira hyodysenteriaeCopyright http://snomed.info/sct ID:113515000 Brachyspira hyodysenteriae (organism)

Brachyspira hyodysenteriae

LA28057-0
Brachyspira hampsonii

Brachyspira hampsonii

LA28034-9
Brachyspira pilosicoliCopyright http://snomed.info/sct ID:113517008 Brachyspira pilosicoli (organism)

Brachyspira pilosicoli

LA28035-6
Brachyspira intermedia

Brachyspira intermedia

LA28036-4
Brachyspira murdochiiCopyright http://snomed.info/sct ID:3421000146106 Brachyspira murdochii (organism)

Brachyspira murdochii

LA28037-2
Brachyspira innocensCopyright http://snomed.info/sct ID:113516004 Brachyspira innocens (organism)

Brachyspira innocens

LA28038-0

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.63 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Brachyspira sp:Typ:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Βακτήριο Brachyspira sp:Type:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Nom Pt Type Αλληλούχιση Απομονωμένο στέλεχος Βακτήριο Brachyspira sp
es-ESSpanish (Spain)Brachyspira sp:Tipo:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Brachyspira sp:Tipo:Punto temporal:Aislado:Nominal:Secuenciación
fr-CAFrench (Canada)Brachyspira sp:Type:Temps ponctuel:Isolat:Nominal:Séquençage
fr-FRFrench (France)Brachyspira:Type:Ponctuel:Isolat:Résultat nominal:Séquençage
fr-BEFrench (Belgium)Brachyspira sp:Type:Temps ponctuel:Isolat:Nominal:Séquençage
it-ITItalian (Italy)Brachyspira sp:Tipo:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Punto nel tempo (episodio)
nl-NLDutch (Netherlands)Brachyspira sp.:type:moment:isolaat:nominaal:sequencing
pl-PLPolish (Poland)Brachyspira sp:typ:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: wynik kategorialny
tr-TRTurkish (Turkey)Brachyspira sp:Tip:Zmlı:İzolat:Snf:Sekanslama
Synonyms: Dizi tayini Tür
zh-CNChinese (China)短螺旋体属单个未知种:类型:时间点:分离株:名义型:序列测定
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 型 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 物种 生物种 蛇形螺旋菌;蛇形螺旋菌属;短螺旋体;短螺旋体单个未知种

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=87413-1