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Term Description

Qualitative results for the detection of internal transcribed spacer 2 (ITS2) region of the ribosomal gene in Candida auris DNA from clinical specimens, including swabs from nasal, axilla, and groin as well as from various surfaces in clinical settings. The test is used for rapid screening of C. auris in order to control and prevent its spread in the healthcare facilities. This term was created for, but not limited in use to, the New York Public Health lab's real-time PCR assay, which detects C. auris and related species: Candida duobushaemulonii, Candida haemulonii, and Candida lusitaniae.

Part Description

LP262557-4   Candida auris ITS2 gene
In Candida auris, the internal transcribed spacer 2 (ITS2) region is located in the ribosomal gene. Assays targeting the ITS2 region have been developed to control and prevent the spread of C. auris and related species in healthcare settings. (http://jcm.asm.org/content/early/2017/05/18/JCM.00630-17) C. auris is an emerging multidrug-resistant yeast causing healthcare-associated infections with high mortality worldwide. PMID: 27634564 C. auris can survive on the exterior body (skin, hair, etc.) and on surfaces in the environment, causing transmission of C. auris from patient to patient. Some C. auris strains are resistant to all three major classes of antifungal drugs, which has not been reported before in other species of Candida.[CDC:fungal/diseases/candidiasis/candida-auris] Source: Centers for Disease Control and Prevention

LOINC Names Get Info

Fully-Specified Name
Candida auris ITS2 gene:PrThr:Pt:XXX:Ord:Probe.amp.tar
Long Common Name
Candida auris ITS2 gene [Presence] in Specimen by NAA with probe detection
Short Name
C auris ITS2 Spec Ql NAA+probe
Display Name
C. auris ITS2 gene NAA+probe Ql (Specimen)
Consumer Name Alpha Get Info
Candida auris ITS2 gene, Specimen

Part Model Get Info

  • Component
    Candida auris ITS2 gene
    LP262557-4
    • Analyte
      Candida auris ITS2 gene
      LP262557-4
      • Component Numerator
        Candida auris ITS2 gene
        LP262557-4
        • Component Numerator Core
          Candida auris ITS2 gene
          LP262557-4
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Probe.amp.tar
    LP6464-4

Example Answer List: LL3987-6

Source: New York State Health (Wadsworth Center)
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8
IndeterminateCopyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value)LA11884-6

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.69 (MIN)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Candida auris gen ITS2:Přítomnost nebo práh:Časový bod:XXX:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
de-DEGerman (Germany)Candida auris ITS2-Gen:Nachweis oder Schwellenwert:Zeitpunkt:XXX:Ordinal:Zielfragmentamplifikation mit Sondendetektion
el-GRGreek (Greece)Γονίδιο ζυμομύκητα Candida auris ITS2:PrThr:Pt:XXX:Ord:Ανιχνευτής.ενίσχυση.στόχου
Synonyms: MICRO Ord PrThr Pt XXX Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο ζυμομύκητα Candida auris ITS2 Ζυμομύκητας Candida auris
es-ESSpanish (Spain)Gen ITS2 Candida auris:PrThr:Punto temporal:XXX:Ord:Sonda con amplificación dirigida
es-MXSpanish (Mexico)Gen ITS2 de Candida auris:Presencia o umbral:Punto temporal:XXX:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FRFrench (France)Candida auris gène ITS2:Présence/Seuil:Ponctuel:Milieux divers:Qualitatif:PCR amplification de cible
it-ITItalian (Italy)Candida auris, gene ITS2:PrThr:Pt:XXX:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NLDutch (Netherlands)Candida auris ITS2-gen:aanwezigheid:moment:XXX:ordinaal:probe-detectie
Synonyms: probe.amp.tar
pl-PLPolish (Poland)Candida auris ITS2 gen:granica wykrywalności:punkt w czasie:XXX:uporządkowany:sonda.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen ITS2 Candida auris
zh-CNChinese (China)耳道假丝酵母菌 ITS2 基因:存在情况或阈值:时间点:XXX:序数型:探针法.基因扩增.靶向
Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 念珠菌 念珠菌属 念珠菌病 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 耳道念珠菌 ITS2 基因;耳念珠菌 ITS2 基因 耳道念珠菌;耳念珠菌 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=87620-1