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Term Description

This assay detects nucleic acid sequences from Coronavirus subtypes 229E, HKU1, OC43, and NL63 RNA in nasopharyngeal swabs using PCR and non-probe detection methods, such as melt curve analysis. A single Coronavirus result is reported when any of the four Coronavirus subtypes are detected. This term was created for, but not limited in use to, BioFire Diagnostic FilmArray Respiratory Panel EZ assay.

Part Description

LP263694-4   Human coronavirus 229E+HKU1+NL63+OC43 RNA
Coronaviruses are positive-sense, single-stranded RNA viruses. The envelope of the virus has glycoprotein spikes that give it a crown-like appearance. There are six strains of coronavirus within two subgroups that infect humans. The strains of human coronaviruses that commonly infect people worldwide include 229E and NL63 in the Alpha subgroup and OC43 and HKU1 in the Beta subgroup. These viruses most often cause common cold symptoms, but can also lead to pneumonia. Severe acute respiratory syndrome coronavirus (SARS-CoV) and the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) are less common but cause more severe illness.https://www.cdc.gov/coronavirus/types.htmlhttps://academic.oup.com/cid/article/37/7/929/422314 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Human coronavirus 229E+HKU1+NL63+OC43 RNA:PrThr:Pt:Nph:Ord:Non-probe.amp.tar
Long Common Name
Human coronavirus 229E+HKU1+NL63+OC43 RNA [Presence] in Nasopharynx by NAA with non-probe detection
Short Name
HCoV 229E+HKU1+NL63+OC43 Np Ql NAA+nonpr
Display Name
HCoV 229E+HKU1+NL63+OC43 RNA NAA+non-probe Ql (Nph)
Consumer Name Alpha Get Info
Human coronavirus 229E+HKU1+NL63+OC43, Nasopharynx

Part Model Get Info

  • Component
    Human coronavirus 229E+HKU1+NL63+OC43 RNA
    LP263694-4
    • Analyte
      Human coronavirus 229E+HKU1+NL63+OC43 RNA
      LP263694-4
      • Component Numerator
        Human coronavirus 229E+HKU1+NL63+OC43 RNA
        LP263694-4
        • Component Numerator Core
          Human coronavirus 229E+HKU1+NL63+OC43
          LP263700-9
        • Component Numerator Core Suffix
          RNA
          LP32423-3
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Nph
    LP30875-6
  • Scale
    Ord
    LP7751-3
  • Method
    Non-probe.amp.tar
    LP208998-7

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.64
Last Updated
Version 2.66 (NAM)
Change Reason
Updated order of analytes in Component from Human coronavirus 229E+HKU1+OC43+NL63 RNA for consistency across terms.
Order vs. Observation
Both

Member of these Panels

LOINCLong Common Name
114493-0Respiratory pathogens 15-plexA DNA and RNA panel - Nasopharynx
114490-6Respiratory pathogens 15-plexB DNA and RNA panel - Nasopharynx by NAA with non-probe detection
82159-5Respiratory pathogens DNA and RNA panel - Nasopharynx by NAA with non-probe detection

Member of these Groups Get Info

LOINC GroupGroup Name
LG32771-4Human coronavirus
LG50873-5Human coronavirus 229E+HKU1+NL63+OC43 RNA|PrThr|Sys:ANYResp

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Lidský koronavirus 229E+HKU1+NL63+OC43 RNA:Přítomnost nebo práh:Časový bod:Nosohltan:Ordinální:Amplifikace nukleových kyselin s detekcí bez sondy
el-GRGreek (Greece)Ανθρώπινος κορωνοϊός 229E+HKU1+NL63+OC43 RNA:PrThr:Pt:Nph:Ord:Χωρίς ανιχνευτή.ενίσχυση.στόχου
Synonyms: MICRO Nph Ord PrThr Pt RNA Ανθρώπινος κορωνοϊός Ανθρώπινος κορωνοϊός 229E Ανθρώπινος κορωνοϊός 229E+HKU1+NL63+OC43 Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κορωνοϊός Χωρίς ανιχνευτή.ενίσχυση.στόχου
es-ESSpanish (Spain)Coronavirus Humano 229E+HKU1+NL63+OC43 RNA:PrThr:Punto temporal:Nasofaringe:Ord:Amplificación del objetivo no basado en sonda
es-MXSpanish (Mexico)Coronavirus humano 229E + HKU1 + NL63 + OC43 ARN:Presencia o umbral:Punto temporal:Nasofaringe:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FRFrench (France)Coronavirus humain 229E+HKU1+NL63+OC43 ARN:Présence/Seuil:Ponctuel:Nasopharynx:Qualitatif:Non-PCR amplification de cible
it-ITItalian (Italy)Coronavirus umano 229E+HKU1+NL63+OC43 RNA:PrThr:Pt:Nph:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Rinofaringe Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
pl-PLPolish (Poland)Ludzki koronawirus 229E+HKU1+NL63+OC43 RNA:granica wykrywalności:punkt w czasie:nosogardziel:uporządkowany:bez sondy.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Koronawirus Ludzki koronawirus Ludzki koronawirus 229E Ludzki koronawirus 229E+HKU1+NL63+OC43 RNA ludzkiego koronawirusa 229E+HKU1+NL63+OC43
zh-CNChinese (China)人类冠状病毒 229E+HKU1+NL63+OC43 RNA:存在情况或阈值:时间点:鼻咽:序数型:非探针法.基因扩增.靶向
Synonyms: HCoV;人冠状病毒 人类冠状病毒（人冠状病毒、HCoV） 229E 型 人类冠状病毒（人冠状病毒、HCoV） 229E+HKU1+NL63+OC43 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 鼻咽标本;鼻咽部;鼻咽部标本

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CodeSystem lookup
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