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Term Description

This term is used to report the nucleotide sequence of the HIV-1 integrase gene based on proviral DNA. The specific regions that are sequenced and reporting format may vary by laboratory and local reporting requirements.

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP207655-4   HIV 1 proviral DNA integrase gene
HIV Integrase is the viral enzyme system responsible for incorporating viral DNA into host DNA resulting in chronic infection. Source: LOINC partner 1

LOINC Names Get Info

Fully-Specified Name
HIV 1 proviral DNA integrase gene:Seq:Pt:Bld MC:Nom:Sequencing
Long Common Name
HIV 1 proviral DNA integrase gene [Nucleotide sequence] in Blood mononuclear cells by Sequencing
Short Name
HIV1 proviral DNA IN Bld MC-Seq
Display Name
HIV 1 proviral DNA integrase gene sequence Nom (Bld MC)
Consumer Name Alpha Get Info
HIV 1 Proviral DNA Integrase gene, Blood

Part Model Get Info

  • Component
    HIV 1 proviral DNA integrase gene
    LP207655-4
    • Analyte
      HIV 1 proviral DNA integrase gene
      LP207655-4
      • Component Numerator
        HIV 1 proviral DNA integrase gene
        LP207655-4
        • Component Numerator Core
          HIV 1 proviral DNA integrase gene
          LP207655-4
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Bld MC
    LP193850-7
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.65
Last Updated
Version 2.65 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)HIV 1 provirová DNA gen pro integrázu:Nukleotidová sekvence:Časový bod:Buňky krevní mononukleární:Nominální:Sekvenace
el-GRGreek (Greece)Γονίδιο ιντεγκράσης προιικού DNA του ιού της ανθρώπινης ανοσοανεπάρκειας 1:Seq:Pt:Αίμα Μονοπύρηνα κύτταρα:Nom:Αλληλούχιση
Synonyms: DNA HIV 1 MICRO Nom Pt Seq Αίμα Αίμα Μονοπύρηνα κύτταρα Αλληλούχιση Γονίδιο Γονίδιο ιντεγκράσης προιικού DNA του ιού της ανθρώπινης ανοσοανεπάρκειας 1 Ιός ανθρώπινης ανοσοανεπάρκειας Ιός της ανθρώπινης ανοσοανεπάρκειας 1 προιϊκό Προιικό DNA ιού της ανθρώπινης ανοσοανεπάρκειας 1
es-ESSpanish (Spain)Gen de la integrasa del ADN proviral del VIH 1:Secuencia de nucleótidos:Punto temporal:Celulas Mononucleares sanguíneas:Nom:Secuenciación
es-MXSpanish (Mexico)Gen de integrasa de ADN proviral del VIH 1:Secuencia de nucleótidos:Punto temporal:Células mononucleares de sangre:Nominal:Secuenciación
fr-FRFrench (France)VIH-1 ADN proviral gène de l'intégrase:Séquence nucléotidique:Ponctuel:Cellules mononucléées de sang périphérique:Résultat nominal:Séquençage
it-ITItalian (Italy)HIV 1 proviral,DNA gene delle integrasi:Seq:Pt:Cellule mononucleate da sangue intero:Nom:Sequenziamento
Synonyms: Microbiologia Punto nel tempo (episodio) Sangue Sequenza nucleotidica
nl-NLDutch (Netherlands)HIV 1 proviraal DNA integrase gen:nucleotidevolgorde:moment:mononucleaire cellen in bloed:nominaal:sequencing
pl-PLPolish (Poland)Gen integrazy prowirusa HIV 1 DNA:sekwencja nukleotydów:punkt w czasie:jednojądrzaste komórki krwi:skala nominalna:sekwencjonowanie
Synonyms: HIV 1 prowirusowy Kwas deoksyrybonukleinowy Ludzki wirus niedoboru odporności Ludzki wirus niedoboru odporności typu 1 Prowirusowe DNA HIV 1 wynik kategorialny
zh-CNChinese (China)HIV 1 型前病毒 DNA 整合酶基因:序列:时间点:全血单个核细胞:名义型:序列测定
Synonyms: Ⅰ AIDS;AIDS 病毒;人类免疫缺陷病毒;人类免疫缺陷病毒（Human immunodeficiency virus，HIV）;爱滋病;艾滋病;艾滋病病毒;获得性免疫缺陷综合征;获得性免疫缺陷综合征（Acquired Immure Deficiency Syndrome，AIDS，艾滋病） HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型） 前病毒;人类免疫缺陷病毒 1 型前病毒;人类免疫缺陷病毒 I 型前病毒 HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型）前病毒 DNA HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型）前病毒 DNA 整合酶（IN）基因 HIV1;HTLV 3;HTLV III;人类免疫缺陷病毒 1 型;人类免疫缺陷病毒 I 型;HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型） I 全血（血液、血）单个核细胞（单核细胞、MC）;全血标本（样品、样本、试样）单个核细胞 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核苷酸序列 血;血液 遗传基因;遗传因子;吉恩;生物基因

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