Log In

Term Description

This term is used to report the nucleotide sequence of the HIV-1 integrase gene based on viral RNA. The specific regions that are sequenced and reporting format may vary by laboratory and local reporting requirements.

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
HIV 1 RNA integrase gene:Seq:Pt:Ser/Plas/Bld:Nom:Sequencing
Long Common Name
HIV 1 RNA integrase gene [Nucleotide sequence] in Serum, Plasma or Blood by Sequencing
Short Name
HIV 1 RNA IN SerPlBld-Seq
Display Name
HIV 1 RNA IN sequence Nom (S/P/Bld)
Consumer Name Alpha Get Info
HIV 1 RNA IN, Blood

Part Model Get Info

  • Component
    HIV 1 RNA integrase gene
    LP265777-5
    • Analyte
      HIV 1 RNA integrase gene
      LP265777-5
      • Component Numerator
        HIV 1 RNA integrase gene
        LP265777-5
        • Component Numerator Core
          HIV 1 RNA integrase gene
          LP265777-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Ser/Plas/Bld
    LP7579-8
    • System Core
      Ser/Plas/Bld
      LP7579-8
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.65
Last Updated
Version 2.65 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)HIV 1 RNA gen pro integrázu:Nukleotidová sekvence:Časový bod:Sérum/plazma/krev:Nominální:Sekvenace
el-GRGreek (Greece)Γονίδιο ιντεγκράσης RNA του ιού της ανθρώπινης ανοσοανεπάρκειας 1:Seq:Pt:Ορός/Πλάσμα/Αίμα:Nom:Αλληλούχιση
Synonyms: HIV 1 MICRO Nom Pt RNA RNA ιού της ανθρώπινης ανοσοανεπάρκειας 1 Seq Αίμα Αλληλούχιση Γονίδιο Γονίδιο ιντεγκράσης RNA του ιού της ανθρώπινης ανοσοανεπάρκειας 1 Ιός ανθρώπινης ανοσοανεπάρκειας Ορός Ορός/Πλάσμα Ορός/Πλάσμα/Αίμα Πλάσμα Πλάσμα/Αίμα
es-ESSpanish (Spain)Gen integrasa VIH1 RNA:Secuencia de nucleótidos:Punto temporal:Suero, Plasma o Sangre:Nom:Secuenciación
es-MXSpanish (Mexico)Gen de la integrasa de ARN del VIH 1:Secuencia de nucleótidos:Punto temporal:Suero, plasma o sangre:Nominal:Secuenciación
fr-FRFrench (France)VIH-1 ARN gène de l'intégrase:Séquence nucléotidique:Ponctuel:Sérum/Plasma/Sang:Résultat nominal:Séquençage
it-ITItalian (Italy)HIV 1, RNA gene integrasi:Seq:Pt:Siero/Plasma/Sangue,Siero,Plasma o Sangue:Nom:Sequenziamento
Synonyms: Microbiologia Plasma Plasma o Sangue Punto nel tempo (episodio) RNA dell''HIV 1 Sangue Sequenza nucleotidica Siero Siero o Plasma
pl-PLPolish (Poland)Integraza HIV 1 RNA gen:sekwencja nukleotydów:punkt w czasie:surowica, osocze lub krew:skala nominalna:sekwencjonowanie
Synonyms: Gen integrazy RNA ludzkiego wirusa niedoboru odporności typu 1;Gen RNA integrazy HIV 1 Ludzki wirus niedoboru odporności Ludzki wirus niedoboru odporności typu 1 osocze lub krew RNA ludzkiego wirusa niedoboru odporności typu 1 wynik kategorialny
zh-CNChinese (China)HIV 1 型 RNA 整合酶基因:序列:时间点:血清/血浆/全血:名义型:序列测定
Synonyms: Ⅰ AIDS;AIDS 病毒;人类免疫缺陷病毒;人类免疫缺陷病毒（Human immunodeficiency virus，HIV）;爱滋病;艾滋病;艾滋病病毒;获得性免疫缺陷综合征;获得性免疫缺陷综合征（Acquired Immure Deficiency Syndrome，AIDS，艾滋病） HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型） RNA 整合酶（IN）基因 HIV1 RNA HIV1;HTLV 3;HTLV III;人类免疫缺陷病毒 1 型;人类免疫缺陷病毒 I 型;HIV 1 型（人类免疫缺陷病毒 1 型、人类免疫缺陷病毒 I 型、人免疫缺陷病毒 1 型、人免疫缺陷病毒 I 型、HIV I、HIV I 型、艾滋病病毒 I 型） I 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 核苷酸序列 血;血液 血浆或全血;血浆/血液;血浆或血液 血清、血浆或全血;血清、血浆或血液;血清/血浆/血液 血清或血浆 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=90903-6