Version 2.80

Term Description

Bacterial strain typing (also known as bacterial typing, subtyping, or fingerprinting) by DNA-sequencing based methods such as multilocus sequence typing (MLST).

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP310336-5   Bacterial strain
Microorganism strain typing, also known as typing, subtyping, and fingerprinting, is used to determine the relationship between different isolates within a specific species or subspecies in order to determine their ancestral relationship and evolutionary pattern. Typing is valuable in multiple contexts, such as detecting and tracking foodborne illness outbreaks and monitoring hospital-associated infections. Typing methods can be based on phenotypic or genetic characteristics. Phenotypic typing methods include serotyping, phage typing, and multilocus enzyme electrophoresis (MEE). Genetic typing methods include pulsed-field gel electrophoresis (PFGE), ribotyping, and DNA-sequencing based methodologies such as multilocus sequence typing (MLST). PMID: 12144198 Microorganism typing can be done for a variety of organisms including bacteria, viruses, and fungi. Source: Regenstrief LOINC

Fully-Specified Name

Component
Bacterial strain
Property
Type
Time
Pt
System
Isolate
Scale
Nom
Method
Sequencing

Additional Names

Long Common Name
Bacterial strain [Type] in Isolate by Sequencing
Short Name
Bacterial strain Islt Seq
Display Name
Bacterial strain Sequencing Nom (Isol)
Consumer Name Alpha Get Info
Bacterial strain

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66 (ADD)
Order vs. Observation
Both

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Bakterienstamm:Typ:Zeitpunkt:Isolat:Nominal:Sequenzierung
el-GR Greek (Greece) Βακτηριακό στέλεχος:Type:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: Type Βακτηριακό στέλεχος
es-MX Spanish (Mexico) Cepa bacteriana:Tipo:Punto temporal:Aislado:Nominal:Secuenciación
es-ES Spanish (Spain) Cepa bacteriana:Tipo:Punto temporal:Aislado:Nom:Secuenciación
fr-FR French (France) Bactérie souche:Type:Ponctuel:Isolat:Résultat nominal:Séquençage
fr-CA French (Canada) Souche bactérienne:Type:Temps ponctuel:Isolat:Nominal:Séquençage
it-IT Italian (Italy) Ceppo batterico:Tipo:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Punto nel tempo (episodio)
zh-CN Chinese (China) 细菌株:类型:时间点:分离株:名义型:序列测定
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 型 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 细菌性 细菌的 菌株;细菌菌株

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=91895-3