Log In

Term Description

The specific codons at which the sequencing methodology did not produce an adequate result.

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Codon &or region with poor sequence quality:Prid:Pt:Isolate/Specimen:Nom:Sequencing
Long Common Name
Codon AndOr region with poor sequence quality [Identifier] in Isolate or Specimen by Sequencing Nominal
Short Name
Codon or region w poor seq quality
Display Name
Codon AndOr region with poor sequence quality Sequencing Nom (Islt/Spec)
Consumer Name Alpha Get Info
Codon andOr region with poor sequence quality

Part Model Get Info

  • Component
    Codon &or region with poor sequence quality
    LP343304-4
    • Analyte
      Codon &or region with poor sequence quality
      LP343304-4
      • Component Numerator
        Codon &or region with poor sequence quality
        LP343304-4
        • Component Numerator Core
          Codon &or region with poor sequence quality
          LP343304-4
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    Isolate/Specimen
    LP266970-5
    • System Core
      Isolate/Specimen
      LP266970-5
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MOLPATH.MISC
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66 (ADD)
Order vs. Observation
Observation

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Kodon a/nebo oblast se špatnou kvalitou sekvencí:Přítomnost nebo identita:Časový bod:Izolát/vzorek:Nominální:Sekvenace
el-GRGreek (Greece)Κωδικόνιο &ή περιοχή με κακή ποιότητα αλληλουχίας:Prid:Pt:Απομονωθέν στέλεχος/Δείγμα:Nom:Αλληλούχιση
Synonyms: MISC MOLPATH MOLPATH.MISC Nom Prid Pt Αλληλούχιση Απομονωθέν στέλεχος/Δείγμα Απομονωμένο στέλεχος Δείγμα Κωδικόνιο &ή περιοχή με κακή ποιότητα αλληλουχίας Περιοχή
es-ESSpanish (Spain)Codón o región con mala calidad de secuencia:Presencia o identidad:Punto temporal:Muestra aislada:Nom:Secuenciación
es-MXSpanish (Mexico)Región del codón AndOr con mala calidad de secuencia:Presencia o identidad:Punto temporal:Aislado o espécimen:Nominal:Secuenciación
fr-FRFrench (France)Codon et/ou région avec séquence de mauvaise qualité:Identification:Ponctuel:Isolat/échantillon:Résultat nominal:Séquençage
it-ITItalian (Italy)Codone &/o regione con scarsa qualità della sequenza:Prid:Pt:Isolato/Campione:Nom:Sequenziamento
Synonyms: Codone e/o regione con scarsa qualità della sequenza Isolato o Campione Miscellanea Miscellanea geni Patologia molecolare Presenza o Identità Punto nel tempo (episodio)
pl-PLPolish (Poland)Kodon i/lub region o sekwencji niskiej jakości:obecność lub identyfikacja:punkt w czasie:szczep/izolat lub próbka:skala nominalna:sekwencjonowanie
Synonyms: wynik kategorialny
zh-CNChinese (China)序列质量不良的密码子 &or 区域:存在与否或特征标识:时间点:分离株/标本:名义型:序列测定
Synonyms: 供检查用的材料;待检物;待试验物;样品;样本;试料;试样 分子病理学.杂项;分子病理学试验.杂项;分子病理学试验类.其他 分子病理学;分子病理学试验 分离株/标本（样本、样品、试样） 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 区;地区;局部 受检物 存在;存在与否;特征标识;身份;身份标识 序列分析;测序 时刻;随机;随意;瞬间 杂项;杂项类;杂项试验 样品 样本 测序质量不良的密码子 &or 区域 试样

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=92732-7