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Term Description

This test detects mutations (including point mutations, deletions, insertions, and rearrangements) in the coding sequences of the PDX1 (previously called IPF1) gene for the diagnosis of Maturity-Onset Diabetes of Young (MODY).

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
PDX1 gene full mutation analysis:Prid:Pt:Bld/Tiss:Nom:Sequencing
Long Common Name
PDX1 gene mutations found [Identifier] in Blood or Tissue by Sequencing Nominal
Short Name
PDX1 Full Mut Anl Bld/T Seq
Display Name
PDX1 gene full mutation analysis Sequencing Nom (Bld/Tiss)
Consumer Name Alpha Get Info
PDX1 gene variant analysis, Blood or tissue specimen

Part Model Get Info

  • Component
    PDX1 gene full mutation analysis
    LP411726-5
    • Analyte
      PDX1 gene full mutation analysis
      LP411726-5
      • Component Numerator
        PDX1 gene full mutation analysis
        LP411726-5
        • Component Numerator Core
          PDX1 gene
          LP411725-7
        • Component Numerator Core Suffix
          full mutation analysis
          LP150044-8
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    Bld/Tiss
    LP7061-7
    • System Core
      Bld/Tiss
      LP7061-7
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL5483-4

Source: Online Mendelian Inheritance in Man®
AnswerCodeScoreAnswer ID
p.Asp76AsnLA30550-0
p.Gln59LeuLA30551-8
p.Glu224LysLA30552-6

Basic Attributes

Class
MOLPATH.MUT
Type
Laboratory
First Released
Version 2.67
Last Updated
Version 2.67 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Gen PDX1 kompletní mutační analýza:Přítomnost nebo identita:Časový bod:Krev/tkáň:Nominální:Sekvenace
el-GRGreek (Greece)Γονίδιο PDX1 πλήρης ανάλυση μεταλλάξεων:Prid:Pt:Αίμα/Ιστός:Nom:Αλληλούχιση
Synonyms: MOLPATH MOLPATH.MUT Nom Prid Pt Αίμα Αίμα/Ιστός Αλληλούχιση Γονίδιο Γονίδιο PDX1 Ιστός πλήρης ανάλυση μεταλλάξεων
es-ESSpanish (Spain)Gen PDX1 Análisis de mutación completa:Presencia o identidad:Punto temporal:Sangre o tejido:Nom:Secuenciación
es-MXSpanish (Mexico)Análisis de mutación completo del gen PDX1:Presencia o identidad:Punto temporal:Sangre o tejido:Nominal:Secuenciación
fr-FRFrench (France)PDX1 gène analyse complète des mutations:Identification:Ponctuel:Sang/Tissu:Résultat nominal:Séquençage
it-ITItalian (Italy)PDX1, gene Analisi di mutazione completa:Prid:Pt:Sangue/Tess:Nom:Sequenziamento
Synonyms: Gene PDX1 Mutazione genica Patologia molecolare Presenza o Identità Punto nel tempo (episodio) Sangue Sangue o Tessuto Tessuto & Strisci
nl-NLDutch (Netherlands)PDX1-gen volledige mutatie-analyse:identificator:moment:bloed of weefsel:nominaal:sequencing
pl-PLPolish (Poland)PDX1 gen pełna analiza mutacji:obecność lub identyfikacja:punkt w czasie:krew lub tkanka:skala nominalna:sekwencjonowanie
Synonyms: Gen PDX1 wynik kategorialny
zh-CNChinese (China)PDX1 基因 全面突变分析:存在与否或特征标识:时间点:全血/组织:名义型:序列测定
Synonyms: 全血或组织;血液/组织;血液或组织 分子病理学.基因突变;分子病理学.突变;分子病理学试验.基因突变;分子病理学试验.突变;分子病理学试验类.突变;基因突变;突变 分子病理学;分子病理学试验 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 完整突变分析;综合突变分析 序列分析;测序 时刻;随机;随意;瞬间 未作说明的组织;组织;组织 & 涂片 胰和十二指肠同源盒 1 基因;Pancreatic And Duodenal Homeobox 1 gene 血;血液 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=94078-3