94559-2

SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection

Active

Term Description

Qualitative detection of nucleic acids within the Open Reading Frame 1ab (ORF1ab) region of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection.
Source: Regenstrief LOINC

Reference Information

Type	Source	Reference
Webcontent	Lab Tests Online^®Copyright Copyright © 2021 Lab Tests Online. All rights reserved.	Coronavirus (COVID-19) Testing

Fully-Specified Name

Component: SARS coronavirus 2 ORF1ab region
Property: PrThr
Time: Pt
System: Respiratory System Specimen
Scale: Ord
Method: Probe.amp.tar

Additional Names

Short Name: SARS-CoV-2 ORF1ab Resp Ql NAA+probe
Display Name: SARS-CoV-2 (COVID-19) ORF1ab region NAA+probe Ql (Respiratory system specimen)
Consumer Name Alpha Get Info: SARS-CoV-2 (COVID-19) ORF1ab region, Respiratory system specimen

Ask at Order Entry

81959-9 Public health laboratory ask at order entry panel

This panel contains a convenience grouping of terms for questions commonly asked when an order is placed in a public health laboratory.

LOINC	Name	R/O/C	Example UCUM Units
81959-9	Public health laboratory ask at order entry panel
Indent81744-5	Submitter's laboratory test method [Type] in Specimen
Indent81658-7	Suspected organism [Identifier] in Specimen
Indent86952-9	Preliminary testing done Specimen
Indent86953-7	Preliminary testing result Specimen
Indent86955-2	Preliminary testing affected submission for further testing Specimen
Indent95417-2	Whether this is the patient's first test for condition of interest
Indent95418-0	Whether patient is employed in a healthcare setting
Indent95419-8	Whether the patient has symptoms related to condition of interest
Indent11368-8	Illness or injury onset date and time	C
Indent77974-4	Whether the patient was hospitalized for condition of interest
Indent95420-6	Whether the patient was admitted to intensive care unit (ICU) for condition of interest
Indent95421-4	Whether patient resides in a congregate care setting
Indent82810-3	Pregnancy status	C
Indent30525-0	Age		a

Example Answer List: LL2021-5

Source: Gen-Probe

Answer	Code	Score	Answer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value)			LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)			LA6577-6
InvalidCopyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value)			LA15841-2

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.68
Last Updated: Version 2.78
Change Reason: Release 2.78: ORDER_OBS: Change from 'observation' to 'Both'; Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;
Order vs. Observation: Both

Member of these Panels

LOINC	Long Common Name
95941-1	Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
92143-7	Respiratory pathogens DNA and RNA panel - Respiratory system specimen by NAA with probe detection
94499-1	Respiratory viral pathogens DNA and RNA panel - Respiratory system specimen Qualitative by NAA with probe detection
96094-8	SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory system specimen by NAA with probe detection
94531-1	SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection

Member of these Groups Get Info

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection
LG51019-4	SARSCoV2 molecular detection

Language Variants Get Info

Tag	Language	Translation
de-DE	German (Germany)	SARS-Coronavirus 2 ORF1ab-Region:Nachweis oder Schwellenwert:Zeitpunkt:Probenmaterial vom Respirationstrakt:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES	Spanish (Spain)	Región ORF1ab del SARS-CoV-2 (COVID-19):PrThr:Punto temporal:Muestra del sistema respiratorio:Ord:Sonda con amplificación dirigida Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio
es-MX	Spanish (Mexico)	Región ORF1ab del coronavirus 2 del SARS:Presencia o umbral:Punto temporal:Espécimen respiratorio:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR	French (France)	Coronavirus SARS-CoV-2 région ORF1ab:Présence/Seuil:Ponctuel:Échantillon du système respiratoire:Qualitatif:PCR amplification de cible
fr-CA	French (Canada)	ORF1ab du coronavirus 2 du SRAS:Présence-Seuil:Temps ponctuel:Échantillon du système respiratoire:Ordinal:Sonde avec amplification de la cible
it-IT	Italian (Italy)	SARS coronavirus 2, regione ORF1ab:PrThr:Pt:Campione da Sistema Respiratorio:Ord:Sonda.amp.tar Synonyms: Campione da Apparato Respiratorio Coronavirus della SARS Microbiologia Presenza o Soglia Punto nel tempo (episodio) Regione ORF1ab di SARS-CoV-2 (COVID-19) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL	Dutch (Netherlands)	SARS-CoV-2 ORF1ab-regio:aanwezigheid:moment:respiratoir monster:ordinaal:probe-detectie Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 systema respiratorium; ademhalingsstelsel
zh-CN	Chinese (China)	SARS 冠状病毒 2 ORF1ab 区域:存在情况或阈值:时间点:呼吸系统标本:序数型:探针法.基因扩增.靶向 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 1ab 开放读框区域;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒供检查用的材料;待检物;待试验物;样品;样本;试料;试样依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向区;地区;局部受检物呼吸道标本（样品、样本）;呼吸系统标本（样品、样本）存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值）微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间样品样本经过扩增的脱氧核糖核酸探针试样

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