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Term Description

Quantitative detection of nucleic acids within the Open Reading Frame 1ab (ORF1ab) region of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection.

LOINC Names Get Info

Fully-Specified Name
SARS coronavirus 2 ORF1ab region:ThreshNum:Pt:Respiratory System Specimen:Qn:Probe.amp.tar
Long Common Name
SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Respiratory system specimen by NAA with probe detection
Short Name
SARS-CoV-2 ORF1ab Ct Resp Qn NAA+probe
Display Name
SARS-CoV-2 (COVID-19) ORF1ab region NAA+probe (Respiratory system specimen) [ThreshNum]
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) ORF1ab region, Respiratory system specimen

Part Model Get Info

  • Component
    SARS coronavirus 2 ORF1ab region
    LP417906-7
    • Analyte
      SARS coronavirus 2 ORF1ab region
      LP417906-7
      • Component Numerator
        SARS coronavirus 2 ORF1ab region
        LP417906-7
        • Component Numerator Core
          SARS coronavirus 2 ORF1ab region
          LP417906-7
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    ThreshNum
    LP188772-0
  • Time
    Pt
    LP6960-1
  • System
    Respiratory System Specimen
    LP436142-6
    • System Core
      Respiratory System Specimen
      LP436142-6
    • Super System
      NULL
       
  • Scale
    Qn
    LP7753-9
  • Method
    Probe.amp.tar
    LP6464-4

Ask at Order Entry

81959-9 Public health laboratory ask at order entry panel

This panel contains a convenience grouping of terms for questions commonly asked when an order is placed in a public health laboratory.

LOINCNameR/O/CCardinalityExample UCUM Units
81959-9Public health laboratory ask at order entry panel
Indent81744-5Submitter's laboratory test method [Type] in Specimen
Indent81658-7Suspected organism [Identifier] in Specimen
Indent86952-9Preliminary testing done Specimen
Indent86953-7Preliminary testing result Specimen
Indent86955-2Preliminary testing affected submission for further testing Specimen
Indent95417-2Whether this is the patient's first test for condition of interest
Indent95418-0Whether patient is employed in a healthcare setting
Indent95419-8Whether the patient has symptoms related to condition of interest
Indent11368-8Illness or injury onset date and timeC
Indent77974-4Whether the patient was hospitalized for condition of interest
Indent95420-6Whether the patient was admitted to intensive care unit (ICU) for condition of interest
Indent95421-4Whether patient resides in a congregate care setting
Indent82810-3Pregnancy statusC
Indent30525-0Agea

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.68
Last Updated
Version 2.75 (MAJ)
Change Reason
Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;
Order vs. Observation
Observation

Member of these Panels

LOINCLong Common Name
96094-8SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory system specimen by NAA with probe detection
94531-1SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection

Member of these Groups Get Info

LOINC GroupGroup Name
LG51017-8SARSCoV2 detection
LG51019-4SARSCoV2 molecular detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)SARS-CoV-2 (COVID-19) oblast ORF1ab:Prahová hodnota:Časový bod:Vzorek z dýchacích cest:Kvantitativní:Amplifikace nukleových kyselin s detekcí sondou
de-DEGerman (Germany)SARS-Coronavirus 2 ORF1ab-Region:Ct-Wert:Zeitpunkt:Probenmaterial vom Respirationstrakt:Quantitativ:Zielfragmentamplifikation mit Sondendetektion
el-GRGreek (Greece)Περιοχή ORF1ab κορωνοϊού SARS 2:ThreshNum:Pt:Δείγμα αναπνευστικού συστήματος:Qn:Ανιχνευτής.ενίσχυση.στόχου
Synonyms: MICRO Pt Qn ThreshNum Αναπνευστικό Αναπνευστικό σύστημα Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Δείγμα Δείγμα αναπνευστικού συστήματος Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Περιοχή Περιοχή ORF1ab κορωνοϊού SARS 2
es-ESSpanish (Spain)Región ORF1ab del SARS-CoV-2 (COVID-19):ThreshNnum:Punto temporal:Muestra del sistema respiratorio:Qn:Sonda con amplificación dirigida
Synonyms: Cuantitativo Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio
es-MXSpanish (Mexico)Región ORF1ab del coronavirus 2 del SARS:ThreshNum:Punto temporal:Espécimen respiratorio:Cuantitativo:Amplificación de ácidos nucleicos con detección de sonda
fr-FRFrench (France)Coronavirus SARS-CoV-2 région ORF1ab:Cycle seuil:Ponctuel:Échantillon du système respiratoire:Numérique:PCR amplification de cible
it-ITItalian (Italy)SARS coronavirus 2, regione ORF1ab:Thresnum:Pt:Campione da Sistema Respiratorio:Qn:Sonda.amp.tar
Synonyms: Campione da Apparato Respiratorio Coronavirus della SARS Limite di soglia Microbiologia Punto nel tempo (episodio) Regione ORF1ab di SARS-CoV-2 (COVID-19) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NLDutch (Netherlands)SARS-CoV-2 ORF1ab-regio:drempelwaarde nummer:moment:respiratoir monster:kwantitatief:probe-detectie
Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 systema respiratorium; ademhalingsstelsel
pl-PLPolish (Poland)Region ORF1ab SARS-CoV-2 (COVID-19):wartość progowa:punkt w czasie:próbka z układu oddechowego:ilościowy:sonda.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Koronawirus
zh-CNChinese (China)SARS 冠状病毒 2 ORF1ab 区域:阈值循环圈数:时间点:呼吸系统标本:定量型:探针法.基因扩增.靶向
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 1ab 开放读框区域;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 供检查用的材料;待检物;待试验物;样品;样本;试料;试样 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 区;地区;局部 受检物 可用数量表示的;定量性;数值型;数量型;连续数值型标尺 呼吸道标本（样品、样本）;呼吸系统标本（样品、样本） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 样品 样本 界值数;界限数;阀值数;临界值数;阈值循环数;阈值数;达到阈值时的循环圈数;荧光信号到达设定阈值时所经历的循环数;Ct 值;Cycle threshold;循环阈值 经过扩增的 脱氧核糖核酸探针 试样

Example Units

UnitSource
{Ct_value}Example UCUM Units

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=94644-2