Version 2.78

Term Description

This term is used to report the sequence of the whole SARS coronavirus 2 (SARS-CoV-2) genome.
Source: Regenstrief LOINC

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Fully-Specified Name

Component
SARS coronavirus 2 whole genome
Property
Seq
Time
Pt
System
Isolate/Specimen
Scale
Nom
Method
Sequencing

Additional Names

Long Common Name
SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing
Short Name
SARS-CoV-2 genome Islt/Spm-Seq
Display Name
SARS-CoV-2 (COVID-19) genome sequence Nom (Islt/Spec)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) genome

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.68
Last Updated
Version 2.69
Change Reason
Release 2.69: SYSTEM: Updated System to "Isolate/Specimen" since the viral genome can be sequenced directly from a clinical specimen or from an isolate, and the sequence should be the same. ;
Order vs. Observation
Both

Member of these Panels

LOINC Long Common Name
96894-1 SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups Get Info

LOINC Group Group Name
LG51017-8 SARSCoV2 detection
LG51019-4 SARSCoV2 molecular detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) SARS-Coronavirus 2 Gesamtgenom:Sequenz:Zeitpunkt:Isolat oder Probenmaterial:Nominal:Sequenzierung
es-ES Spanish (Spain) Genoma completo del SARS-CoV-2 (COVID-19):Secuencia de nucleótidos:Punto temporal:Muestra aislada:Nom:Secuenciación
es-MX Spanish (Mexico) Genoma completo del coronavirus 2 del SARS:Secuencia de nucleótidos:Punto temporal:Aislado o espécimen:Nominal:Secuenciación
fr-FR French (France) Coronavirus SARS-CoV-2 génome entier:Séquence nucléotidique:Ponctuel:Isolat/échantillon:Résultat nominal:Séquençage
it-IT Italian (Italy) SARS coronavirus 2, intero genoma:Seq:Pt:Isolato/Campione:Nom:Sequenziamento
Synonyms: Coronavirus della SARS Intero genoma di SARS-CoV-2 (COVID-19) Isolato o Campione Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sequenza nucleotidica
nl-NL Dutch (Netherlands) geheel genoom van SARS-CoV-2:nucleotidevolgorde:moment:isolaat of monster:nominaal:sequencing
Synonyms: isolaat/specimen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PL Polish (Poland) Cały genom SARS-CoV-2 (COVID-19):sekwencja nukleotydu:punkt w czasie:szczep/izolat lub próbka:cecha:sekwencjonowanie
Synonyms: Koronawirus
zh-CN Chinese (China) SARS 冠状病毒 2 全基因组:序列:时间点:分离株/标本:名义型:序列测定
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 全（完整）基因组;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 供检查用的材料;待检物;待试验物;样品;样本;试料;试样 分离株/标本（样本、样品、试样） 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 受检物 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 样品 样本 核苷酸序列 试样

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=94764-8