94764-8
SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing
Active
Term Description
This term is used to report the sequence of the whole SARS coronavirus 2 (SARS-CoV-2) genome.
Source: Regenstrief LOINC
Part Description
LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600
Source: Regenstrief LOINC
Reference Information
Type | Source | Reference |
---|---|---|
Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Fully-Specified Name
- Component
- SARS coronavirus 2 whole genome
- Property
- Seq
- Time
- Pt
- System
- Isolate/Specimen
- Scale
- Nom
- Method
- Sequencing
Additional Names
- Short Name
- SARS-CoV-2 genome Islt/Spm-Seq
- Display Name
- SARS-CoV-2 (COVID-19) genome sequence Nom (Islt/Spec)
- Consumer Name Alpha Get Info
- SARS-CoV-2 (COVID-19) genome
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.68
- Last Updated
- Version 2.69
- Change Reason
- Release 2.69: SYSTEM: Updated System to "Isolate/Specimen" since the viral genome can be sequenced directly from a clinical specimen or from an isolate, and the sequence should be the same. ;
- Order vs. Observation
- Both
Member of these Panels
LOINC | Long Common Name |
---|---|
96894-1 | SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method |
Member of these Groups Get Info
LOINC Group | Group Name |
---|---|
LG51017-8 | SARSCoV2 detection |
LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
Tag | Language | Translation |
---|---|---|
de-DE | German (Germany) | SARS-Coronavirus 2 Gesamtgenom: |
es-ES | Spanish (Spain) | Genoma completo del SARS-CoV-2 (COVID-19): |
es-MX | Spanish (Mexico) | Genoma completo del coronavirus 2 del SARS: |
fr-FR | French (France) | Coronavirus SARS-CoV-2 génome entier: |
it-IT | Italian (Italy) | SARS coronavirus 2, intero genoma: Synonyms: Coronavirus della SARS Intero genoma di SARS-CoV-2 (COVID-19) Isolato o Campione Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sequenza nucleotidica |
nl-NL | Dutch (Netherlands) | geheel genoom van SARS-CoV-2: Synonyms: isolaat/specimen SARS-virus severe acute respiratory syndrome coronavirus 2; |
pl-PL | Polish (Poland) | Cały genom SARS-CoV-2 (COVID-19): Synonyms: Koronawirus |
zh-CN | Chinese (China) | SARS 冠状病毒 2 全基因组: Synonyms: 2019 新型冠状病毒; |
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LOINC Copyright
Copyright © 2024 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright