96895-8SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics methodActive
Term Description
SARS coronavirus 2 (SARS-CoV-2) lineage determine by molecular genetic methods, such as sequencing or PCR. Results may be determined using the Pangolin lineage assignment application [https://cov-lineages.org/pangolin.html] or another lineage classification.
Source: Regenstrief LOINC
Part Description
LP422739-5 SARS coronavirus 2 lineage
Lineage nomenclatures are intended to provide a detailed level differentiation of viral mutations of SARS-CoV-2 over time. However, proposed lineage nomenclatures are not intended to portray every evolutionary change, but rather those associated with important epidemiological and biological events.[PMID:32669681] That being said they are not as broad-brushed as clades, but are expected to correspond to outbreaks.[PMID:32794443]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- SARS coronavirus 2 lineage
- Property
- Prid
- Time
- Pt
- System
- XXX
- Scale
- Nom
- Method
- Molgen
Additional Names
- Short Name
- SARS-CoV-2 lineage Spec
- Display Name
- SARS-CoV-2 (COVID-19) lineage Molgen Nom (Specimen)
- Consumer Name Alpha
- SARS-CoV-2 (COVID-19) lineage, Specimen
Example Answer List LL5807-4
Source: LOINC
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| SARS-CoV-2 A.1.1 lineage | LA31701-8 | ||
| SARS-CoV-2 B.1.1.238 lineage Also known as Nigerian variant |
LA31620-0 | ||
| SARS-CoV-2 B.1.2 lineage | LA31703-4 | ||
| SARS-CoV-2 B.1.1 lineage | LA31704-2 | ||
| SARS-CoV-2 B.1.1.7 lineage Also known as WHO Alpha variant, and UK variant |
LA31705-9 | ||
| SARS-CoV-2 B.1.29 lineage | LA31706-7 | ||
| SARS-CoV-2 B.2.4 lineage | LA31702-6 | ||
| SARS-CoV-2 B.1.351 lineage Also known as WHO Beta variant, GH/501Y.V2, and South Africa variant |
LA32553-2 | ||
| SARS-CoV-2 P.1 lineage Also known as WHO gamma lineage, and Brazil variant |
LA32555-7 | ||
| SARS-CoV-2 B.1.617.2 lineage Also known as WHO Delta variant |
LA32556-5 |
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.72
- Change Reason
- Release 2.72: DefinitionDescription: Updated description to clarify that this term is not specific to Pangolin lineage only.;
- Order vs. Observation
- Observation
Reference Information
| Type | Source | Reference |
|---|---|---|
| Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 96894-1 | SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method |
Member of these Groups
| LG51017-8 | SARSCoV2 detection |
Language Variants Get Info
- zh-CNChinese (China)
- SARS 冠状病毒 2 谱系:
存在与否或特征标识: 时间点: XXX: 名义型: 分子遗传学类实验室方法 - nl-NLDutch (Netherlands)
- SARS-CoV-2 lineage:
identificator: moment: XXX: nominaal: moleculair genetisch onderzoek - de-DEGerman (Germany)
- SARS-Coronavirus 2 S-Abstammungslinie:
Nachweis oder Identität: Zeitpunkt: XXX: Nominal: Molekulargenetisch - it-ITItalian (Italy)
- SARS coronavirus 2, lignaggio:
Prid: Pt: XXX: Nom: Molgen - pl-PLPolish (Poland)
- linia rodowodowa SARS-CoV-2:
Obecność lub identyfikacja: Punkt w czasie: XXX: Nominalny: Genetyka molekularna - es-MXSpanish (Mexico)
- Linaje del coronavirus 2 del SARS:
Orgullo: Punto temporal: No especificado: Nominal: Molgen - es-ESSpanish (Spain)
- Linaje de SARS-CoV-2 (COVID-19):
Presencia o identidad: Punto temporal: XXX: Nom: Genética molecular
LOINC FHIR® API Example - CodeSystem Request Get Info
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96895-8
LOINC Copyright
Copyright © 2022 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright