96897-4

SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection

Active

Term Description

This panel contains results for the detection of Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2) in oropharyngeal wash (oral rinse, gargle) samples using nucleic acid amplification assays with probe-based detection for the diagnosis of Coronavirus Disease 2019 (COVID-19).

Part Descriptions

LP417539-6 SARS coronavirus 2 RNA panel
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov]https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance Source: Regenstrief LOINC

LP422509-2 Oropharyngeal wash
Oropharyngeal wash, also known as gargle, oral rinse or throat wash, includes a sampling of the entire oral cavity, including the oropharyngeal, nasopharynx, tongue, saliva, larynx and oral mucosa. The gargle sample collection method involves a patient gargling a sterile saline solution and spitting it into a collection tube. The sample may be used for the molecular detection of various respiratory infections, including SARS coronavirus 2 (COVID-19). Source: LOINC

Panel Hierarchy

Details for each LOINC in Panel LHC-Forms

LOINC	Name	Example UCUM Units
96897-4	SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection
Indent96797-6	SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection
Indent96898-2	SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection	{Ct_value}
Indent96899-0	SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection	{Ct_value}
Indent96900-6	SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection	{Ct_value}

LOINC Names Get Info

Fully-Specified Name: SARS coronavirus 2 RNA panel:-:Pt:Oropharyngeal wash:-:Probe.amp.tar
Long Common Name: SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection
Short Name: SARS-CoV-2 RNA Pnl OPA wash NAA+probe
Display Name: SARS-CoV-2 (COVID-19) RNA panel NAA+probe (Oropharyngeal wash)
Consumer Name Alpha Get Info: SARS-CoV-2 (COVID-19) RNA Panel, Oropharyngeal wash

Part Model Get Info

Component
SARS coronavirus 2 RNA panel
LP417539-6
- Analyte
  SARS coronavirus 2 RNA panel
  LP417539-6
  - Component Numerator
    SARS coronavirus 2 RNA panel
    LP417539-6
    - Component Numerator Core
      SARS coronavirus 2 RNA panel
      LP417539-6
    - Component Numerator Core Suffix
      NULL
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
-
LP6769-6
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
Oropharyngeal wash
LP422509-2
- System Core
  Oropharyngeal wash
  LP422509-2
- Super System
  NULL
Scale
-
LP7747-1
Method
Probe.amp.tar
LP6464-4

Basic Attributes

Class: PANEL.MICRO
Type: Laboratory
First Released: Version 2.70
Last Updated: Version 2.70 (ADD)
Order vs. Observation: Order
Panel Type: Panel

Member of these Groups Get Info

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection
LG51019-4	SARSCoV2 molecular detection

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	SARS-CoV-2 (COVID-19) RNA panel:-:Časový bod:Orofaryngeální výplach:-:Amplifikace nukleových kyselin s detekcí sondou
de-DE	German (Germany)	SARS-Coronavirus 2 RNA (Liste):-:Zeitpunkt:Oropharyngeale Lavage:-:Zielfragmentamplifikation mit Sondendetektion
el-GR	Greek (Greece)	Πίνακας RNA κορωνοϊού SARS 2:-:Pt:Στοματοφαρυγγική πλύση:-:Ανιχνευτής.ενίσχυση.στόχου Synonyms: - MICRO PANEL.MICRO Pt RNA Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Πίνακας RNA κορωνοϊού SARS 2 Στοματοφαρυγγική πλύση
es-ES	Spanish (Spain)	Panel de ARN del SARS-CoV-2 (COVID-19):Propiedades mixtas (sólo paneles):Punto temporal:Lavado orofaríngeo:-:Sonda con amplificación dirigida
es-MX	Spanish (Mexico)	Panel de ARN del coronavirus 2 del SARS:-:Punto temporal:Lavado orofaríngeo:-:Probe.amp.tar
fr-FR	French (France)	Coronavirus SARS-CoV-2 ARN panel:-:Ponctuel:Lavage oropharyngé:-:PCR amplification de cible
it-IT	Italian (Italy)	SARS coronavirus 2, panel RNA:-:Pt:Lavaggio orofaringeo:-:Sonda.amp.tar Synonyms: Coronavirus della SARS Microbiologia Panel RNA di SARS-CoV-2 (COVID-19) Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Set di prescrizione microbiologia Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL	Dutch (Netherlands)	SARS-CoV-2 RNA panel:-:moment:orofaryngeaal spoelsel:-:probe-detectie Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
zh-CN	Chinese (China)	SARS 冠状病毒 2 RNA 组套:-:时间点:口咽洗液:-:探针法.基因扩增.靶向 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 RNA 组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向医嘱套餐医嘱套餐类医嘱套餐组医嘱组医嘱组.微生物学;实验室组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）类.微生物学试验;医嘱组.微生物学试验;医嘱组类.微生物学;医嘱组类.微生物学试验;实验室医嘱组类.微生物学;微生物学医嘱组;微生物学医嘱组类医嘱组合医嘱组合类医嘱组套医嘱组套类医嘱组类口咽（口咽部）洗液（洗剂）多重;多重型;多重标尺类型;多重精度类型套餐套餐医嘱套餐医嘱组套餐医嘱组类实验室医嘱套餐实验室医嘱套餐类实验室医嘱组实验室医嘱组合类实验室医嘱组套实验室医嘱组套类实验室套餐医嘱组实验室套餐医嘱组类实验室检验项目医嘱组合类实验室检验项目组合类微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间核糖核酸;Ribonucleic acid 检验医嘱组合类检验项目医嘱组合类检验项目组合类组组合组合医嘱组合类组套经过扩增的脱氧核糖核酸探针

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LOINC Copyright

Copyright © Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.