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Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP262511-1   Brachyspira sp nox gene
A polymerase chain reaction (PCR) assay using nox-specific restriction fragment length polymorphisms (RFLPs) has been developed that can differentiate all five species of porcine Brachyspira. PMID: 12089283 The nox gene encodes NADH oxidase in Brachyspira species. Species of Brachyspira can be differentiated based on the nox gene sequence due to its variability across species. PMID: 26458507 Several species of the gram-negative spirochete Brachyspira can cause swine dysentery (SD) including B. hyodysenteriae, B. intermedia, B. innocens, B. murdochii, B. aalborgi, B. alvinipulli, B. suanatina, and a provisional species called Brachyspira hampsonii. B. hyodysenteriae, B. suanatina, and B. hampsonii cause a severe mucohaemorrhagic colitis found mainly in grower and finisher pigs. Brachyspira that are weakly heamolytic causing a mild colitis include B. murdochii, B. intermedia, B. aalborgi, and B. alvinipulli in pigs, chickens and humans. Transmission of Brachyspira sp can occur in several ways including: pigs that have subclinical infection; infection from birds or feral animals that act as potential reservoirs; reduced immunity in a herd; routine diagnostic and control measures are not adhered to; and environmental changes such as a change in diet, co-infections and other stresses that increase norepinephrine levels in the gut that can result in the growth and colonization of some species of Brachyspira. Diagnoses of Brachyspira species are primarily made using polymerase chain reaction (PCR) test and/or immune staining. PMID: 11015363 https://porcinehealthmanagement.biomedcentral.com/articles/10.1186/s40813-015-0002-1 PMID: 27629903 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Brachyspira sp nox gene:Seq:Pt:Isolate:Nom:Sequencing
Long Common Name
Brachyspira sp nox gene [Nucleotide sequence] in Isolate by Sequencing
Short Name
Brachyspira sp nox gene Islt-Seq
Display Name
Brachyspira sp nox gene sequence Nom (Isol)
Consumer Name Alpha Get Info
Brachyspira species nox gene

Part Model Get Info

  • Component
    Brachyspira sp nox gene
    LP262511-1
    • Analyte
      Brachyspira sp nox gene
      LP262511-1
      • Component Numerator
        Brachyspira sp nox gene
        LP262511-1
        • Component Numerator Core
          Brachyspira sp nox gene
          LP262511-1
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.63 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Brachyspira sp gen nox:Nukleotidová sekvence:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Γονίδιο Brachyspira sp nox:Seq:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Nom Pt Seq Αλληλούχιση Απομονωμένο στέλεχος Βακτήριο Brachyspira sp Γονίδιο Γονίδιο Brachyspira sp nox
es-ESSpanish (Spain)Gen nox Brachyspira sp:Secuencia de nucleótidos:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Gen de Brachyspira sp nox:Secuencia de nucleótidos:Punto temporal:Aislado:Nominal:Secuenciación
fr-FRFrench (France)Brachyspira gène nox:Séquence nucléotidique:Ponctuel:Isolat:Résultat nominal:Séquençage
it-ITItalian (Italy)Brachyspira sp, gene nox:Seq:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Punto nel tempo (episodio) Sequenza nucleotidica
nl-NLDutch (Netherlands)Brachyspira sp. nox-gen:nucleotidevolgorde:moment:isolaat:nominaal:sequencing
pl-PLPolish (Poland)Brachyspira sp nox gen:sekwencja nukleotydów:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: Gen nox Brachyspira sp wynik kategorialny
zh-CNChinese (China)短螺旋体属 nox 基因:序列:时间点:分离株:名义型:序列测定
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核苷酸序列 物种 生物种 短螺旋体属（蛇形螺旋菌、蛇形螺旋菌属、短螺旋体） nox 基因 蛇形螺旋菌;蛇形螺旋菌属;短螺旋体;短螺旋体单个未知种 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=87412-3