88134-2

Varicella zoster virus DNA [Presence] in Ocular fluid by NAA with probe detection

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Part Descriptions

LP14853-3 Varicella zoster virus
Varicella zoster virus (VZV) is a double-stranded alphaherpesvirus that causes seasonal outbreaks of chickenpox and shingles in non-immunized populations. VZV is highly infectious and is transmitted by contact with the ruptured fluid filled blisters and respiratory secretions of infected individuals. Immunity post infection is usually lifelong though the latent virus inhabits the sensory nerve ganglia where it can reactivate causing shingles when immunity declines with aging.[http://jvi.asm.org/content/88/24/13936.full] In the over fifty strains of VZV that have been sequenced it has been found that a single nucleotide polymorphism occurs about every 100 bases. The patterns of polymorphisms in VZV correlate with different geographical regions of infection and is the basis for the classification of viral clades.[https://grose.lab.uiowa.edu/vzv-genomes-and-evolution] Breuer proposed the nomenclature for the VZV clades as 1-5 with the suspected clades VI and VII to be confirmed later. The geographical regions associated with the seven clades are as follows:
Clades 1 and 3-represent the dominant clades of the circulating VZV in Europe and the Americas
Clades 4 and 5-found in Africa
Clade VI found in France, Italy
Clade VII exclusively isolated in the US
Clade 2-Asia from Korea, Japan, China not found in India, Nepal and Bangladesh where clades 4 and 5 were dominant
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054591/ Source: Regenstrief LOINC

LP7448-6 Ocular fld
The "Ocular fld" System in LOINC encompasses aqueous humor and vitreous humor. Aqueous humor is found in the anterior and posterior chambers of the eye, both of which are located anterior to the lens. Vitreous humor is found in the vitreous chamber, which is located between the lens and the retina. This System is used for LOINC terms that represent tests run on either aqueous or vitreous fluid; it does not imply that both types of fluid are tested in any given instance. Source: Regenstrief LOINC

Fully-Specified Name

Component: Varicella zoster virus DNA
Property: PrThr
Time: Pt
System: Ocular fld
Scale: Ord
Method: Probe.amp.tar

Additional Names

Short Name: VZV DNA Ocflu Ql NAA+probe
Display Name: VZV DNA NAA+probe Ql (Ocular fluid)
Consumer Name Alpha Get Info: Varicella zoster virus (VZV; Chickenpox), Eye fluid

Example Answer List: LL744-4

Source: Regenstrief Institute

Answer	Code	Score	Answer ID
Detected			LA11882-0
Not detected			LA11883-8

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.63
Last Updated: Version 2.63
Order vs. Observation: Both

Member of these Groups Get Info

LOINC Group	Group Name
LG32750-8	Varicella zoster virus
LG50919-6	Varicella zoster virus DNA\|PrThr\|Sys:ANYEYE

Language Variants Get Info

Tag	Language	Translation
es-ES	Spanish (Spain)	Virus Varicella zoster ADN:PrThr:Punto temporal:Fluido ocular:Ord:Sonda con amplificación dirigida
es-MX	Spanish (Mexico)	ADN del virus de la varicela zóster:Presencia o umbral:Punto temporal:Fluido ocular:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-CA	French (Canada)	Virus varicelle-zona, ADN:Présence-Seuil:Temps ponctuel:Liquide oculaire:Ordinal:Sonde avec amplification de la cible
fr-FR	French (France)	Varicelle zona virus ADN:Présence/Seuil:Ponctuel:Liquide oculaire:Qualitatif:PCR amplification de cible
fr-BE	French (Belgium)	Virus varicelle-zona ADN:PrThr:Temps ponctuel:Liquide oculaire:Ordinal:Sonde avec amplification de la cible Synonyms: VZV
it-IT	Italian (Italy)	Varicella zoster, virus DNA:PrThr:Pt:Liquido oculare:Ord:Sonda.amp.tar Synonyms: Liquido oculare Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus della varicella zoster
nl-NL	Dutch (Netherlands)	varicella-zostervirus DNA:aanwezigheid:moment:oogvocht:ordinaal:probe-detectie Synonyms: probe.amp.tar Varicella zoster virus
ru-RU	Russian (Russian Federation)	Varicella zoster вирус ДНК:PrThr:ТчкВрм:Глазная ждк:Пор:Проба.усил.миш Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR	Turkish (Turkey)	Varicella zoster virüsü DNA:MevcEşik:Zmlı:Oküler sv:Srl:Prob.amf.hdf Synonyms: Mevcut
zh-CN	Chinese (China)	水痘带状疱疹病毒 DNA:存在情况或阈值:时间点:眼液:序数型:探针法.基因扩增.靶向 Synonyms: HHV-3 DNA HHV-3;VZ;VZV;人类疱疹病毒 3 型;人类疱疹病毒 III 型;带状疱疹;水痘;水痘带状疱疹;水痘病毒;Varicella zoster virus;水痘-带状疱疹病毒 VZV DNA 人类疱疹病毒 3 型 DNA 人类疱疹病毒 III 型 DNA 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向去氧核糖核酸;脱氧核糖核酸去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA）存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值）微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间水痘病毒 DNA 经过扩增的脱氧核糖核酸探针

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Copyright © 2024 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © 1995-2024, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.