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Term Description

Specimens include tissues, oral fluid, processing fluids, feces, fecal swabs, or other specimens as determined by the diagnostician.

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP269248-3   Porcine circovirus type 3 ORF2 gene
Veterinary Medicine:

Porcine circoviruses (PCV) are small nonenveloped DNA viruses in the Circoviridae family that contain a single-stranded circular genome. PCV are the smallest viruses replicating autonomously in eukaryotic cells by utilizing the host polymerase for genome amplification. PCV type 3 (PCV3) was first identified in 2016 in the United States. Though infection with PCV3 is usually asymptomatic, it can cause systemic disease and reproductive disorders. Though the virus is newly described, it has existed for some time and is found in pigs across the world.https://www.nationalhogfarmer.com/animal-health/new-insights-spread-and-relevance-porcine-circovirus-type-3 The ORF2 gene is used to differentiate strains of PCV3. Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Porcine circovirus type 3 ORF2 gene:Seq:Pt:Isolate:Nom:Sequencing
Long Common Name
Porcine circovirus type 3 ORF2 gene [Nucleotide sequence] in Isolate by Sequencing
Short Name
PCV 3 ORF2 gene Islt-Seq
Display Name
Porcine circovirus type 3 ORF2 gene sequence Nom (Isol)
Consumer Name Alpha Get Info
Porcine circovirus type 3 ORF2 gene

Part Model Get Info

  • Component
    Porcine circovirus type 3 ORF2 gene
    LP269248-3
    • Analyte
      Porcine circovirus type 3 ORF2 gene
      LP269248-3
      • Component Numerator
        Porcine circovirus type 3 ORF2 gene
        LP269248-3
        • Component Numerator Core
          Porcine circovirus type 3 ORF2 gene
          LP269248-3
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Seq
    LP62164-6
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.65
Last Updated
Version 2.65 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Prasečí cirkovirus typ 3 gen ORF2:Nukleotidová sekvence:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Γονίδιο ORF2 κυκλοϊού των χοίρων τύπου 3:Seq:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Nom Pt Seq Type Αλληλούχιση Απομονωμένο στέλεχος Γονίδιο Γονίδιο ORF2 κυκλοϊού των χοίρων τύπου 3 Κυκλοϊός των χοίρων Κυκλοϊός των χοίρων τύπου 3 Των χοίρων
es-ESSpanish (Spain)Gen ORF2 de circovirus porcino tipo 3:Secuencia de nucleótidos:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Gen ORF2 del circovirus porcino tipo 3:Secuencia de nucleótidos:Punto temporal:Aislado:Nominal:Secuenciación
it-ITItalian (Italy)Circovirus suino tipo 3, gene ORF2:Seq:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Punto nel tempo (episodio) Sequenza nucleotidica
nl-NLDutch (Netherlands)varkenscircovirus type 3 ORF2-gen:nucleotidevolgorde:moment:isolaat:nominaal:sequencing
Synonyms: porcine ''porcine'' circovirus ''porcine'' circovirus type 3 soort
pl-PLPolish (Poland)Cirkowirus świń typu 3 gen ORF2:sekwencja nukleotydów:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: Gen ORF2 Cirkowirusa świń typu 2d wynik kategorialny
zh-CNChinese (China)猪圆环病毒 3 型 ORF2 基因:序列:时间点:分离株:名义型:序列测定
Synonyms: Ⅲ CV III PCV PCV 3 型 ORF2 基因;PCV3 ORF2 基因 PCV 3 型;PCV3 三 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 叁 圆环病毒（Circovirus，Circo virus，CV） 圆环病毒属 型 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核苷酸序列 猪的 猪科 猪科的 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=90887-1