96797-6

SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection

Active

Term Description

Qualitative detection of nucleic acid from the SARS coronavirus 2 (SARS-CoV-2) in oropharyngeal wash (oral rinse, gargle) samples by nucleic acid amplification (NAA) with probe-based detection methods. Testing is performed for the diagnosis of COVID-19.

Part Descriptions

LP417540-4 SARS coronavirus 2
The 2019 Novel Coronavirus (2019-nCoV) is a coronavirus first identified as the cause of a respiratory illness outbreak in Wuhan, China. Initially, the outbreak was linked to a large seafood and animal market and thought to only be spread by animal to person contact. Within a short time, a growing number of patients who had not been exposed to animal markets were diagnosed with the infection, indicating person-to-person transmission. As of January 2020, infections with 2019-nCoV had been reported internationally due to confirmed cases in travelers from Wuhan. Overall, clinical symptoms appear milder than SARS Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS) Coronavirus (MERS-CoV) infections as do the fatality rate and transmissibility. PMID: 31953166 Reported illnesses range from minor or no respiratory symptoms to severe acute respiratory illness and death.

The full genome of the 2019-nCoV was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Source: LOINC

LP422509-2 Oropharyngeal wash
Oropharyngeal wash, also known as gargle, oral rinse or throat wash, includes a sampling of the entire oral cavity, including the oropharyngeal, nasopharynx, tongue, saliva, larynx and oral mucosa. The gargle sample collection method involves a patient gargling a sterile saline solution and spitting it into a collection tube. The sample may be used for the molecular detection of various respiratory infections, including SARS coronavirus 2 (COVID-19). Source: LOINC

LOINC Names Get Info

Fully-Specified Name: SARS coronavirus 2 RNA:PrThr:Pt:Oropharyngeal wash:Ord:Probe.amp.tar
Long Common Name: SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection
Short Name: SARS-CoV-2 RNA OPA wash Ql NAA+probe
Display Name: SARS-CoV-2 (COVID-19) RNA NAA+probe Ql (Oropharyngeal wash)
Consumer Name Alpha Get Info: SARS-CoV-2 (COVID-19), Oropharyngeal wash

Part Model Get Info

Component
SARS coronavirus 2 RNA
LP417541-2
- Analyte
  SARS coronavirus 2 RNA
  LP417541-2
  - Component Numerator
    SARS coronavirus 2 RNA
    LP417541-2
    - Component Numerator Core
      SARS coronavirus 2
      LP417540-4
    - Component Numerator Core Suffix
      RNA
      LP32423-3
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
PrThr
LP217195-9
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
Oropharyngeal wash
LP422509-2
- System Core
  Oropharyngeal wash
  LP422509-2
- Super System
  NULL
Scale
Ord
LP7751-3
Method
Probe.amp.tar
LP6464-4

Example Answer List: LL2021-5

Source: Gen-Probe

Answer	Code	Score	Answer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value)			LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)			LA6577-6
InvalidCopyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value)			LA15841-2

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.70
Last Updated: Version 2.70 (ADD)
Order vs. Observation: Both

Member of these Panels

LOINC	Long Common Name
96897-4	SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection

Member of these Groups Get Info

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection
LG51019-4	SARSCoV2 molecular detection

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	SARS-CoV-2 (COVID-19) RNA:Přítomnost nebo práh:Časový bod:Orofaryngeální výplach:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
de-DE	German (Germany)	SARS-Coronavirus 2 RNA:Nachweis oder Schwellenwert:Zeitpunkt:Oropharyngeale Lavage:Ordinal:Zielfragmentamplifikation mit Sondendetektion
el-GR	Greek (Greece)	Κορωνοϊός SARS 2 RNA:PrThr:Pt:Στοματοφαρυγγική πλύση:Ord:Ανιχνευτής.ενίσχυση.στόχου Synonyms: MICRO Ord PrThr Pt RNA Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Στοματοφαρυγγική πλύση
es-ES	Spanish (Spain)	Panel del SARS-CoV-2 (COVID-19) RNA:PrThr:Punto temporal:Lavado orofaríngeo:Ord:Sonda con amplificación dirigida
es-MX	Spanish (Mexico)	ARN del coronavirus 2 del SARS:PrThr:Punto temporal:Lavado orofaríngeo:Ordinal:Probe.amp.tar
fr-FR	French (France)	Coronavirus SARS-CoV-2 ARN:Présence/Seuil:Ponctuel:Lavage oropharyngé:Qualitatif:PCR amplification de cible
it-IT	Italian (Italy)	SARS coronavirus 2 RNA:PrThr:Pt:Lavaggio orofaringeo:Ord:Sonda.amp.tar Synonyms: Coronavirus della SARS Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL	Dutch (Netherlands)	SARS-CoV-2 RNA:aanwezigheid:moment:orofaryngeaal spoelsel:ordinaal:probe-detectie Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
zh-CN	Chinese (China)	SARS 冠状病毒 2 RNA:存在情况或阈值:时间点:口咽洗液:序数型:探针法.基因扩增.靶向 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向口咽（口咽部）洗液（洗剂）存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值）微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间核糖核酸;Ribonucleic acid 经过扩增的脱氧核糖核酸探针

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LOINC Copyright

Copyright © Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.