LOINC
Version 2.72

96894-1SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics methodActive

Term Description

This panel contains sequencing and identification results for SARS coronavirus 2 (SARS-CoV-2) detected in various specimens. Results may include the genome sequence, identified S gene mutations of known and unknown significance, and the clade [LOINC:96896-6], lineage [LOINC:96895-8] and other (e.g. common) variant name [LOINC:96741-4], such as "UK variant", based on the viral genome sequence and mutations found. Currently, lineage results may be determined using the Pangolin lineage assignment application (https://cov-lineages.org/pangolin.html), and clade assignment based on either the Nextstrain application (https://clades.nextstrain.org) or GISAID (https://www.gisaid.org/).
Source: Regenstrief LOINC

Panel Hierarchy
Details for each LOINC in Panel LHC-Forms

LOINC Name R/O/C Cardinality Example UCUM Units
96894-1 SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method
Indent98062-3 Sequencing study identifier
Indent96766-1 GISAID sequence accession number
Indent94764-8 SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing
Indent96751-3 SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method
Indent96752-1 SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method
Indent96896-6 SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method
Indent96895-8 SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method
Indent96741-4 SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing
Indent96755-4 SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative

Fully-Specified Name

Component
SARS coronavirus 2 sequencing & identification panel
Property
-
Time
Pt
System
XXX
Scale
-
Method
Molgen

Additional Names

Short Name
SARS-CoV-2 Seq and ID Pnl Spec
Display Name
SARS-CoV-2 (COVID-19) sequencing and identification panel Molgen (Specimen)
Consumer Name Alpha
SARS-CoV-2 (COVID-19) sequencing and identification panel, Specimen

Basic Attributes

Class
PANEL.MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Order
Panel Type
Panel

Member of these Groups

LG51017-8 SARSCoV2 detection

Language Variants Get Info

zh-CNChinese (China)
SARS 冠状病毒 2 序列测定与鉴定组套:-:时间点:XXX:-:分子遗传学类实验室方法
nl-NLDutch (Netherlands)
SARS-CoV-2 sequencing en identificatie panel:-:moment:XXX:-:moleculair genetisch onderzoek
it-ITItalian (Italy)
SARS coronavirus 2, identificazione & sequenziamento:-:Pt:XXX:-:Molgen
es-MXSpanish (Mexico)
Panel de identificación y secuenciación del coronavirus 2 del SARS:-:Punto temporal:No especificado:-:Molgen
es-ESSpanish (Spain)
Panel de identificación y secuenciación del SARS-CoV-2 (COVID-19):Propiedades mixtas (sólo paneles):Punto temporal:XXX:-:Genética molecular

LOINC FHIR® API Example - CodeSystem and Questionnaire Requests Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96894-1 https://fhir.loinc.org/Questionnaire/?url=http://loinc.org/q/96894-1