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Term Description

This term is used to report whether the sequence for the microorganism of interest (target organism) was detected. If sequencing identifies nucleic acids from the organism of interest, further information related to the sequence is provided.

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Microorganism of interest sequence:PrThr:Pt:XXX:Ord:Sequencing
Long Common Name
Microorganism of interest sequence [Presence] in Specimen
Short Name
Microorganism Sequence Ql
Display Name
Microorganism of interest sequence Sequencing Ql (Specimen)
Consumer Name Alpha Get Info
Microorganism of interest sequence, Specimen

Part Model Get Info

  • Component
    Microorganism of interest sequence
    LP426899-3
    • Analyte
      Microorganism of interest sequence
      LP426899-3
      • Component Numerator
        Microorganism of interest sequence
        LP426899-3
        • Component Numerator Core
          Microorganism of interest sequence
          LP426899-3
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Mikroorganismus sledovaný sekvence:Přítomnost nebo práh:Časový bod:XXX:Ordinální:Sekvenace
el-GRGreek (Greece)Ακολουθία μικροοργανισμού ενδιαφέροντος:PrThr:Pt:XXX:Ord:Αλληλούχιση
Synonyms: MICRO Ord PrThr Pt XXX Ακολουθία μικροοργανισμού ενδιαφέροντος Αλληλούχιση Μικροοργανισμός
es-ESSpanish (Spain)Secuencia del microorganismo de interés:PrThr:Punto temporal:XXX:Ord:Secuenciación
es-MXSpanish (Mexico)Secuencia del microorganismo de interés:PrThr:Punto temporal:No especificado:Ordinal:Secuenciación
fr-CAFrench (Canada)Séquence de micro-organisme d'intérêt:Présence-Seuil:Temps ponctuel:XXX:Ordinal:Séquençage
fr-FRFrench (France)Séquence de microorganisme d'intérêt:Présence/Seuil:Ponctuel:Milieux divers:Qualitatif:Séquençage
it-ITItalian (Italy)Microrganismo, sequenza di interesse:PrThr:Pt:XXX:Ord:Sequenziamento
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio)
zh-CNChinese (China)目标微生物核酸序列:存在情况或阈值:时间点:XXX:序数型:序列测定
Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 目标（所感兴趣的、所关注的、兴趣、关注）微生物核酸（基因）序列

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=97601-9