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Term Description

This term was created for, but is not limited in use to, Pathogenius Laboratories' Level 1 Wound and/or ENT test panels, which use quantitative PCR to identify commonly-found microorganisms in wound or ear, nose, and throat samples, respectively.

Part Description

LP185686-5   Streptococcus pyogenes csrS gene
Streptococcus pyogenes is an important cause of pharyngitis as well as more severe infections, including sepsis and toxic shock syndrome. The csrS gene is associated with S pyogenes virulence, and therefore, its presence in clinical specimens can be used to identify this organism as one of the pathogens responsible for a specific infection. PMID: 21371090 Source: Regenstrief LOINC, PMID: 21371090

LOINC Names Get Info

Fully-Specified Name
Streptococcus pyogenes csrS gene:PrThr:Pt:XXX.swab:Ord:Probe.amp.tar
Long Common Name
Streptococcus pyogenes csrS gene [Presence] in Swab specimen by NAA with probe detection
Short Name
S pyogenes csrS Swab Ql NAA+probe
Display Name
S. pyogenes csrS gene NAA+probe Ql (Swab specimen)
Consumer Name Alpha Get Info
Streptococcus pyogenes csrS gene, Swab specimen

Part Model Get Info

  • Component
    Streptococcus pyogenes csrS gene
    LP185686-5
    • Analyte
      Streptococcus pyogenes csrS gene
      LP185686-5
      • Component Numerator
        Streptococcus pyogenes csrS gene
        LP185686-5
        • Component Numerator Core
          Streptococcus pyogenes csrS gene
          LP185686-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    XXX.swab
    LP189536-8
  • Scale
    Ord
    LP7751-3
  • Method
    Probe.amp.tar
    LP6464-4

Example Answer List: LL2994-3

Source: Bioinfomatics Research and Testing Laboratory
AnswerCodeScoreAnswer ID
Low (< 10^5 bacteria)LA21375-3
Medium (10^5-10^7 bacteria)LA21374-6
High (> 10^7 bacteria)LA21373-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.52
Last Updated
Version 2.71 (MIN)
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Member of these Panels

LOINCLong Common Name
76586-7ENT microorganism gene identification panel by NAA with probe detection
76585-9Wound microorganism gene identification panel by NAA with probe detection

Member of these Groups Get Info

LOINC GroupGroup Name
LG41610-3Streptococcus pyogenes

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Streptococcus pyogenes gen csrS:Přítomnost nebo práh:Časový bod:Výtěr:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
de-DEGerman (Germany)Streptococcus pyogenes csrS-Gen:Nachweis oder Schwellenwert:Zeitpunkt:XXX.Abstrich:Ordinal:Zielfragmentamplifikation mit Sondendetektion
el-GRGreek (Greece)Γονίδιο csrS του βακτηρίου Streptococcus pyogenes (Στρεπτόκοκκος):PrThr:Pt:XXX.επίχρισμα:Ord:Ανιχνευτής.ενίσχυση.στόχου
Synonyms: MICRO Ord PrThr Pt XXX XXX.επίχρισμα Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Βακτήριο Streptococcus pyogenes (Στρεπτόκοκκος) Γονίδιο Γονίδιο csrS του βακτηρίου Streptococcus pyogenes (Στρεπτόκοκκος)
es-ESSpanish (Spain)gen csrS Streptococcus pyogenes:PrThr:Punto temporal:Escobillon XXX:Ord:Sonda con amplificación dirigida
es-MXSpanish (Mexico)Gen csrS de Streptococo pyogenes:Presencia o umbral:Punto temporal:XXX.swab:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FRFrench (France)Streptococcus pyogenes gène csrS:Présence/Seuil:Ponctuel:Prélèvement divers:Qualitatif:PCR amplification de cible
it-ITItalian (Italy)Streptococcus pyogenes, gene csrS:PrThr:Pt:XXX.tampone:Ord:Sonda.amp.tar
Synonyms: Gene csrs di Streptococcus pyogenes Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
pl-PLPolish (Poland)Streptococcus pyogenes csrS gen:granica wykrywalności:punkt w czasie:XXX.wymaz:uporządkowany:sonda.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen csrS Streptococcus pyogenes Paciorkowiec ropotwórczy grupy A;GAS
tr-TRTurkish (Turkey)Streptococcus pyogenis csrS geni:MevcEşik:Zmlı:XXX.sürüntü:Srl:Prob.amf.hdf
Synonyms: Mevcut
zh-CNChinese (China)化脓性链球菌 csrS 基因:存在情况或阈值:时间点:XXX.拭子:序数型:探针法.基因扩增.靶向
Synonyms: A 族链球菌 csrS 基因;A 组链球菌 csrS 基因;A 群链球菌 csrS 基因;产脓链球菌 csrS 基因;酿脓链球菌 csrS 基因 A 族链球菌;A 组链球菌;Group A Streptococcus;GAS;A 群链球菌;GAS;产脓链球菌;酿脓链球菌 XXX.拭子（拭样、采样刷、样品刷、药签、棉签）;未作说明的（此处不作说明的、不明）体系（标本、样品、样本、试样、系统）.拭子 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=76581-8