92701-2 Staphylococcus aureus DNA [Presence] in Nose by NAA with probe detection

Part Descriptions

LP16662-6   Staphylococcus aureus
Potentially pathogenic bacteria found in nasal membranes, skin, hair follicles, and perineum of warm-blooded animals. They may cause a wide range of infections and intoxications. Source: National Library of Medicine, MeSH 2006

LP16662-6   Staphylococcus aureus
Staphylococcus aureus (S. aureus) are cocci-shaped gram-positive bacteria that assemble in grape-like clusters and cause a wide variety of infections. Up to 50% of adults carry S. aureus on their skin or in their mucous membranes. It is highly adaptable, resulting in drug resistant strains: methicillin-resistant S. aureus (MRSA), methicillin-susceptbile S. aureus (MSSA), vancomycin-intermediate S. aureus (VISA) and vancomycin-resistant S. aureus (VRSA). Examples of human infections caused by S. aureus: bacteremia, gastroenteritis, infective endocarditis, meningitis, osteomyelitis, pulmonary infections, septic arthritis, skin and soft tissue infections, toxic shock syndrome, and urinary tract infections. Diagnosis of S. aureus infection may vary by infection site, e.g., clinical signs and symptoms for skin infections, blood or tissue cultures for other infection types. People with chronic health conditions, weakened immune systems or IV drug users are at a greater risk, as are patients in intensive care units (ICUs) and those with a history of certain types of surgeries and patients with implanted medical devices. PMID: 28722898 Source: Regenstrief LOINC

Fully-Specified Name

Component

Staphylococcus aureus DNA

Property

PrThr

Time

Pt

System

Nose

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

S aureus DNA Nose Ql NAA+probe

Display Name

S. aureus DNA NAA+probe Ql (Nose)

Consumer Name Alpha Get Info

Staphylococcus aureus, Nose

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.66

Order vs. Observation

Both

Example Answer List LL2038-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• Nasal
• NASBA
• Nos
• Nose (nasal passage)
• Nucleic acid sequence based analysis
• o71
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• S aureus
• Screen
• SDA
• Smell
• Staph
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

79447-9 Staphylococcus aureus capsular polysaccharide enzyme cpe gene [Presence] in Nose by NAA with probe detection

Term Description

This term was created for, but is not limited in use to, the Roche cobas® MRSA/SA Test, which is indicated for the direct detection of MRSA and SA DNA from nasal swabs to aid in the prevention and control of MRSA and SA infections in healthcare settings.
Source: Regenstrief LOINC

Part Descriptions

LP200488-7   Staphylococcus aureus capsular polysaccharide enzyme (cpe) gene
The Staphylococcus aureus capsular polysaccharide enzyme (cpe) gene identifies the presence of Staph aureus (SA) regardless of antibiotic resistance. The SCCmec cassette-orfX junction (also called the SCCmec cassette right extremity junction region) is a nucleic acid target that specifically identifies methicillin-resistant SA (MRSA). These two tests can be used together to distinguish the presence of SA from MRSA. Source: Regenstrief LOINC

Fully-Specified Name

Component

Staphylococcus aureus capsular polysaccharide enzyme (cpe) gene

Property

PrThr

Time

Pt

System

Nose

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

S aureus cpe Nose Ql NAA+probe

Display Name

S. aureus capsular polysaccharide enzyme cpe gene NAA+probe Ql (Nose)

Consumer Name Alpha Get Info

Staphylococcus aureus capsular polysaccharide enzyme (cpe) gene, Nose

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.54

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

18939

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Capsule
• DNA NUCLEIC ACID PROBE
• DNA probe
• Enz
• Enzymes
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• Nasal
• NASBA
• Nos
• Nose (nasal passage)
• Nucleic acid sequence based analysis
• o71
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• S aureus
• S aureus cpe
• Screen
• SDA
• Smell
• Staph
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

90001-9 Methicillin resistant Staphylococcus aureus (MRSA) DNA [Presence] in Nose by NAA with probe detection

Term Description

This term can be used to report the results for assays that detect mec and SCCmec.
Source: Regenstrief LOINC

Part Descriptions

LP34425-6   Staphylococcus aureus.methicillin resistant
Methicillin resistant Staphylococcus aureus (MRSA) is a staph infection that is resistant to multiple antibiotics. MRSA frequently causes skin infections, but can also cause pneumonia and, if untreated, can lead to sepsis. MRSA is spread when a person comes in contact with an infected wound or by sharing personal items with a person infected with MRSA. The risk of infection is increased in crowded spaces such as gyms, daycare centers, military bases, and patients being treated as inpatients in medical facilities. Studies have shown that one in three people are asymptomatic carriers of staph in their nose and that two people in 100 are carriers of MRSA. To prevent contracting MRSA, maintain good personal hygiene by frequently hand washing and bathing often, especially after exercise. Keep scrapes and open wounds covered and get medical attention for skin infections. MRSA infection of the skin may initially resemble a spider bite, but can become red, swollen, painful, warm to the touch, filled with pus, and accompanied by a fever.[https://www.cdc.gov/mrsa/index.html] Source: Regenstrief LOINC

Fully-Specified Name

Component

Staphylococcus aureus.methicillin resistant DNA

Property

PrThr

Time

Pt

System

Nose

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

MRSA DNA Nose Ql NAA+probe

Display Name

MRSA DNA NAA+probe Ql (Nose)

Consumer Name Alpha Get Info

MRSA, Nose

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.65

Last Updated

Version 2.73

Order vs. Observation

Both

Common Test Rank Get Info

10000

Preferred Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Celbenin
• Deoxyribonucleic acid
• Dimethoxypenicillin
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Metacillin
• Metin
• Microbiology
• MRSA
• NAA+probe
• NAAT
• Nasal
• NASBA
• Nos
• Nose (nasal passage)
• Nucleic acid sequence based analysis
• o71
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• S aureus
• Screen
• SDA
• Smell
• Staficyn
• Staph
• Staphicillin
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

77682-3 Staphylococcus aureus methicillin resistance SCCmec+orfX junction [Presence] in Nose by NAA with probe detection

Term Description

This assay is not intended to diagnose MRSA infections nor to guide or monitor treatment. This term was created for, but not limited in use to, the submitter's BD GeneOhm MRSA Assay test kit which directly detects, through the presence of SCCmec cassette at the orfX junction, nasal colonization by methicillin resistant S. aureus (MRSA) to aid in the prevention and control of infections in healthcare settings, for patients at risk.
Source: Regenstrief LOINC

Part Descriptions

LP190755-1   Staphylococcus aureus methicillin resistance SCCmec+orfX junction
Methicillin resistance in S. aureus is primarily mediated by the mecA gene which is carried on a mobile genetic element called the staphylococcal cassette chromosome mec (SCCmec), which integrates at an open reading frame in the S. aureus genome known as orfX. Source: Regenstrief LOINC

Fully-Specified Name

Component

Staphylococcus aureus methicillin resistance SCCmec+orfX junction

Property

PrThr

Time

Pt

System

Nose

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

MRSA SCCmec+orfX Nose Ql NAA+probe

Display Name

MRSA SCCmec+orfX junction NAA+probe Ql (Nose)

Consumer Name Alpha Get Info

MRSA SCCmec+orfX Junction, Nose

Basic Attributes

Class

ABXBACT

Type

Laboratory

First Released

Version 2.52

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Removed parentheses around SCCmec+orfX in Component based on our current LOINC model.

Order vs. Observation

Both

Common Test Rank Get Info

18681

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• ANTIBIOTIC SUSCEPTIBILITIES
• Celbenin
• Dimethoxypenicillin
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Metacillin
• Metin
• MRSA
• MRSA SCCmec+orfX
• NAA+probe
• NAAT
• Nasal
• NASBA
• Nos
• Nose (nasal passage)
• Nucleic acid sequence based analysis
• o71
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Resist
• Resistanc
• Resistant
• Resistent
• S aureus
• Screen
• SDA
• Smell
• Staficyn
• Staph
• Staphicillin
• Staphylococcus cassette chromosome (SCCmec)
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification