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Term Description

This term is used to report whether a known mutation was detected within the S (spike) gene of SARS coronavirus 2 (SARS-CoV-2) by molecular methods. To report the mutation found, use LOINC 96751-3. For reporting the SARS-CoV-2 variant strain identified, various codes are available in LOINC depending on the nomenclature used. For the most general code (nomenclature unspecified), use SARS-CoV-2 (COVID-19) variant [Type] in Specimen LOINC 96741-4. To report the lineage for the variant, use SARS-CoV-2 (COVID-19) lineage [Type] in Specimen LOINC 96895-8. To report the clade for the variant, use SARS-CoV-2 (COVID-19) clade [Type] in Specimen LOINC 96896-6.

LOINC Names Get Info

Fully-Specified Name
SARS coronavirus 2 S gene mutation:PrThr:Pt:{Specimen}:Ord:{Molgen}
Long Common Name
SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molgen
Short Name
SARS-CoV-2 S gene mut Spec Ql
Display Name
SARS-CoV-2 (COVID-19) S gene mutation Molgen Ql (Specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) S gene mutation, Specimen

Part Model Get Info

  • Component
    SARS coronavirus 2 S gene mutation
    LP422188-5
    • Analyte
      SARS coronavirus 2 S gene mutation
      LP422188-5
      • Component Numerator
        SARS coronavirus 2 S gene mutation
        LP422188-5
        • Component Numerator Core
          SARS coronavirus 2 S gene mutation
          LP422188-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    {Specimen}
    LP451871-0
  • Scale
    Ord
    LP7751-3
  • Method
    {Molgen}
    LP452305-8

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.83 (MAJ)
Order vs. Observation
Observation

Member of these Panels

LOINCLong Common Name
96894-1SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups Get Info

LOINC GroupGroup Name
LG51017-8SARSCoV2 detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)SARS-CoV-2 (COVID-19) gen S mutace:Přítomnost nebo práh:Časový bod:XXX:Ordinální:Molekulární genetika
de-DEGerman (Germany)SARS-Coronavirus 2 S-Gen Mutation:Nachweis oder Schwellenwert:Zeitpunkt:XXX:Ordinal:Molekulargenetisch
el-GRGreek (Greece)Μετάλλαξη γονιδίου S κορωνοϊού SARS 2:PrThr:Pt:XXX:Ord:Μοριακή γενετική
Synonyms: MICRO Ord PrThr Pt S XXX Γονίδιο Γονίδιο S κορωνοϊού SARS 2 Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Μετάλλαξη γονιδίου S κορωνοϊού SARS 2 Μοριακή γενετική
es-MXSpanish (Mexico)Mutación del gen S del coronavirus 2 del SARS:PrThr:Punto temporal:No especificado:Ordinal:Molgen
es-ESSpanish (Spain)Mutación del gen S del SARS-CoV-2 (COVID-19):PrThr:Punto temporal:XXX:Ord:Genética molecular
fr-FRFrench (France)Coronavirus SARS-CoV-2 mutation du gène:Présence/Seuil:Ponctuel:Milieux divers:Qualitatif:Biologie moléculaire
it-ITItalian (Italy)SARS coronavirus 2, mutazione del gene S:PrThr:Pt:XXX:Ord:Molgen
Synonyms: Coronavirus della SARS Gene S di SARS-CoV-2 (COVID-19) Genetica molecolare Microbiologia Mutazione del gene S di SARS coronavirus 2;mutazione del gene S di SARS-CoV-2 (COVID-19) Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19)
nl-NLDutch (Netherlands)SARS-CoV-2 S-genmutatie:aanwezigheid:moment:XXX:ordinaal:moleculair genetisch onderzoek
Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PLPolish (Poland)Mutacja genu S SARS-CoV-2:granica wykrywalności:punkt w czasie:XXX:uporządkowany:genetyka molekularna
Synonyms: diagnostyka molekularna Koronawirus
zh-CNChinese (China)SARS 冠状病毒 2 S 基因突变:存在情况或阈值:时间点:XXX:序数型:分子遗传学类实验室方法
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II S 型 SARS 冠状病毒 2 S 基因突变;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内，用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96752-1