114501-0
Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool
Active
82208-0 Giardia lamblia DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Giardia lamblia DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP14122-3 Giardia lamblia
Giardia lamblia, or Giardia intestinalis, is a pear-shaped flagellated parasitic protozoa that attaches to the intestinal epithelium and feeds on mucous secretions. The organism is often non-pathogenic and found in completely asymptomatic individuals. Individuals with giardiasis, a colonization of the G. lamblia in the small intestines, can develop diarrhea and abdominal pain, occasionally vomiting and fever.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Giardia lamblia DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1357
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG41616-0 | Giardia lamblia |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Giardia lamblia DNA: |
| de-DE | German (Germany) | Giardia lamblia DNA: |
| el-GR | Greek (Greece) | Giardia lamblia (Λαμβλίαση) DNA: Synonyms: DNA Giardia lamblia (Λαμβλίαση) MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Giardia lamblia ADN: |
| es-MX | Spanish (Mexico) | ADN de Giardia lamblia: |
| fr-CA | French (Canada) | Giardia lamblia, ADN: |
| fr-FR | French (France) | Giardia lamblia ADN: |
| it-IT | Italian (Italy) | Giardia lamblia DNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Giardia lamblia DNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Kwas deoksyrybonukleinowy Lamblia jelitowa |
| uk-UA | Ukrainian (Ukraine) | Giardia lamblia ДНК: Synonyms: 3 Self-Sustaining Sequence Replication; |
| zh-CN | Chinese (China) | 蓝氏贾第鞭毛虫 DNA: Synonyms: 依次型; |
82206-4 Cyclospora cayetanensis DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Cyclospora cayetanensis DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP14898-8 Cyclospora cayetanensis
Cyclospora cayetanensis is a protozoan that causes disease in humans, and perhaps other primates. It has been linked in the United States from fecally-contaminated imported raspberries and was virtually unknown before about 1990, but has been on the rise since. The health risk associated with the disease is usually confined to adult foreigners visiting endemic regions and acquiring the infection: this is why C. cayetanensis has been labeled as causing "traveler's diarrhea."
This species was placed in the Cyclospora genus because of the spherical shape of its sporocysts
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Wikipedia
Fully-Specified Name
- Component
- Cyclospora cayetanensis DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1351
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG41642-6 | Cyclospora |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Cyclospora cayetanenis DNA: |
| el-GR | Greek (Greece) | Παράσιτο Cyclospora cayetanensis DNA: Synonyms: DNA MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κόπρανα Παράσιτο Cyclospora cayetanensis Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Cyclospora cayetanenis ADN: |
| es-MX | Spanish (Mexico) | ADN de Cyclospora cayetanensis: |
| fr-CA | French (Canada) | Cyclospora cayetanensis, ADN: |
| fr-FR | French (France) | Cyclospora cayetanensis ADN: |
| it-IT | Italian (Italy) | Cyclospora cayetanensis DNA: Synonyms: Amplificazione target non basata su sonda Cyclospora cayetanenis Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Cyclospora cayetanensis DNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Cyclospora cayetanensis Kwas deoksyrybonukleinowy |
| uk-UA | Ukrainian (Ukraine) | Cyclospora cayetanensis ДНК: Synonyms: 3 Self-Sustaining Sequence Replication; |
| zh-CN | Chinese (China) | 卡晏圆孢子虫 DNA: Synonyms: Cyclospora cayetanensis (圆孢子虫) DNA Cyclospora cayetanensis; |
82205-6 Cryptosporidium sp DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Cryptosporidium sp DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between different species of cryptosporidium. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP16823-4 Cryptosporidium sp
A genus of coccidian parasites of the family cryptosporidiidae, found in the intestinal epithelium of many vertebrates including humans.
Source: National Library of Medicine, MeSH 2006
Fully-Specified Name
- Component
- Cryptosporidium sp DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1356
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG41646-7 | Cryptosporidium |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Cryptosporidium sp DNA: |
| de-DE | German (Germany) | Cryptosporidium sp DNA: |
| el-GR | Greek (Greece) | Πρωτόζωο Cryptosporidium sp DNA: Synonyms: DNA MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κόπρανα Πρωτόζωο Cryptosporidium sp Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Cryptosporidium especie ADN: |
| es-MX | Spanish (Mexico) | ADN de Cryptosporidium sp: |
| fr-CA | French (Canada) | Cryptosporidium sp, ADN: |
| fr-FR | French (France) | Cryptosporidium ADN: |
| it-IT | Italian (Italy) | Cryptosporidium sp DNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Cryptosporidium sp DNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Cryptosporidium sp. Kwas deoksyrybonukleinowy |
| uk-UA | Ukrainian (Ukraine) | Cryptosporidium sp ДНК: Synonyms: 3 Self-Sustaining Sequence Replication; |
| zh-CN | Chinese (China) | 隐孢子虫属单个未知种 DNA: Synonyms: 依次型; |
82202-3 Yersinia enterocolitica DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Yersinia enterocolitica DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP17258-2 Yersinia enterocolitica
A species of the genus Yersinia, isolated from both man and animal. It is a frequent cause of bacterial gastroenteritis in children.
Source: National Library of Medicine, MeSH 2006
LP17258-2 Yersinia enterocolitica
Yersinia enterocolitica is a species of gram-negative coccobacillus-shaped bacterium, belonging to the family Enterobacteriaceae. Primarily a zoonotic disease (cattle, deer, pigs, and birds), animals which recover frequently become asymptomatic carriers of the disease.
Yersinia enterocolitica is a heterogeneous group of strains, classified into 6 biogroups, and into more than 57 O serogroups. The human pathogenic strains most frequently isolated worldwide belong to serogroups O:3, O:5,27, O:8 and O:9. The major route of Y. enterocolitica infection is through contaminated foods or causing gastrointestinal infections which are usually self-limiting. PMID: 22019131
Source: Regenstrief LOINC, PMID: 22019131
Fully-Specified Name
- Component
- Yersinia enterocolitica DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1262
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Yersinia enterocolitica DNA: |
| de-DE | German (Germany) | Yersinia enterocolitica DNA: |
| el-GR | Greek (Greece) | Βακτήριο Yersinia enterocolitica DNA: Synonyms: DNA MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Βακτήριο Yersinia enterocolitica Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Yersinia enterocolitica ADN: |
| es-MX | Spanish (Mexico) | ADN de Yersinia enterocolitica: |
| fr-CA | French (Canada) | Yersinia enterocolitica, ADN: |
| fr-FR | French (France) | Yersinia enterocolitica ADN: |
| it-IT | Italian (Italy) | Yersinia enterocolitica DNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Yersinia enterocolitica DNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Kwas deoksyrybonukleinowy Yersinia enterocolitica |
| zh-CN | Chinese (China) | 小肠结肠炎耶尔森氏菌 DNA: Synonyms: 依次型; |
82200-7 Vibrio cholerae+parahaemolyticus+vulnificus DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Vibrio cholerae, V. parahaemolyticus, and V. vulnificus DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not indicate which species has been detected. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP212411-5 Vibrio cholerae+parahaemolyticus+vulnificus
Vibrio is a genus of Gram-negative bacteria associated with gastroenteritis. Pathogenic Vibrio species include V. cholerae (causes cholera), V. parahaemolyticus, and V. vulnificus. Pathogenic species can cause foodborne illness, usually associated with eating undercooked seafood. PMID: 16151093
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Vibrio cholerae+parahaemolyticus+vulnificus DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1355
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Vibrio cholerae+parahaemolyticus+vulnificus DNA: |
| el-GR | Greek (Greece) | Βακτήρια Vibrio cholerae+parahaemolyticus+vulnificus DNA: Synonyms: DNA MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Βακτήρια Vibrio cholerae+parahaemolyticus+vulnificus Βακτήριο Vibrio cholerae (Δονάκιο της χολέρας) Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Vibrio cholerae+parahaemolyticus+vulnificus ADN: |
| es-MX | Spanish (Mexico) | Vibrio cholerae + parahaemolyticus + ADN vulnificus: |
| fr-FR | French (France) | Vibrio cholerae+parahaemolyticus+vulnificus ADN: |
| it-IT | Italian (Italy) | Vibrio cholerae+parahaemolyticus+vulnificus DNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| zh-CN | Chinese (China) | 霍乱弧菌+副溶血弧菌+创伤弧菌 DNA: Synonyms: 依次型; |
80350-2 Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with non-probe detection
Term Description
This assay detects the invasion plasmid antigen H (ipaH) gene that is specific to Shigella species and enteroinvasive E. coli (EIEC) using PCR and melt curve analysis. The assay does not distinguish between Shigella and EIEC. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Part Descriptions
LP145956-1 Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
The invasion plasmid antigen H (ipaH) gene is a multicopy gene exclusively found in all Shigella and enteroinvasive E. coli (EIEC). Shigella and EIEC both evolved from nonpathogenic Escherichia coli, and sequencing of multiple housekeeping genes indicates that EIEC is genetically related to Shigella. Shigella causes bacillary dysentery with symptoms including abdominal cramps, nausea, fever and a bloody and mucus diarrhea. By testing for the absence of lysine decarboxylase (LDC) activity and presence of the IpaH gene, Shigella and EIEC can be differentiated from non-enteroinvasive E. coli. PMID: 21901636
Source: Regenstrief LOINC, PMID: 21901636
Fully-Specified Name
- Component
- Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.54
- Last Updated
- Version 2.73 (MIN)
- Change Reason
- Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 1343
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Shigella sp+EIEC invaze plasmidového antigenu H gen ipaH: |
| de-DE | German (Germany) | Shigella species+EIEC-invasion plasmid antigen H (ipaH)-Gen: |
| el-GR | Greek (Greece) | Γονίδιο πλασμιδιακού αντιγόνου εισβολής H (ipaH) του Shigella species+εντεροδιεισδυτικού E. coli (EIEC): Synonyms: H MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο πλασμιδιακού αντιγόνου εισβολής H (ipaH) του Shigella species+εντεροδιεισδυτικού E. coli (EIEC) Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Gen antígeno H plasmídico invasor bacterial (ipaH): |
| es-MX | Spanish (Mexico) | Especies de Shigella + gen del antígeno H (ipaH) del plásmido invasor EIEC: |
| fr-CA | French (Canada) | Shigella+Escherichia coli entéroinvasif ipaH gène: |
| fr-FR | French (France) | Shigella+Escherichia coli entéroinvasif gène ipaH: |
| it-IT | Italian (Italy) | Specie shigella e Escherichia Coli enteroinvasive antigene H plasmidico di invasione batterica (ipaH), gene: Synonyms: Amplificazione target non basata su sonda Gene di antigene H plasmidico di invasione batteri Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Shigella species+EIEC antygen plazmidu inwazyjnego H (ipaH) gen: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Plazmidowy gen ipaH antygenu H u Shigella species i enteroinwazyjnych Escherichia coli (EIEC) Shigella species i Enteroinwazyjne Escherichia coli (EIEC) |
| zh-CN | Chinese (China) | 志贺菌+肠侵袭性大肠埃希菌侵袭质粒抗原 H (ipaH) 基因: Synonyms: Ag H 型 依次型; |
82203-1 Escherichia coli Stx1 and Stx2 toxin stx1+stx2 genes [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Escherichia coli shiga-like toxin stx1 and stx2 genes in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between the two toxins. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP204844-7 Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2.
Source: LOINC partner 1
Fully-Specified Name
- Component
- Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Change Reason
- Updated Component from "Escherichia coli shiga-like toxin 1+2 (stx1+stx2) genes" based on the current E. coli nomenclature and LOINC naming model for assays that detect specific bacteria and viral genes.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1347
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Escherichia coli toxin Stx1 a Stx2 geny stx1+stx2: |
| de-DE | German (Germany) | Escherichia coli Stx1+Stx2-Toxine stx1+stx2-Gene: |
| el-GR | Greek (Greece) | Γονίδια stx1+stx2 της τοξίνης Stx1+Stx2 του Escherichia coli (Κολοβακτηρίδιο): Synonyms: Escherichia coli (Κολοβακτηρίδιο) MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδια stx1+stx2 της τοξίνης Stx1 & |
| es-ES | Spanish (Spain) | Genes (stx1+stx2) de la toxina de Escherichia coli shiga 1+2+J8135: |
| es-MX | Spanish (Mexico) | Escherichia coli Stx1 + Stx2 toxina stx1 + genes stx2: |
| fr-CA | French (Canada) | Escherichia coli toxines stx1 + stx2 gènes: |
| fr-FR | French (France) | Escherichia coli gènes des toxines stx1+stx2: |
| it-IT | Italian (Italy) | Escherichia coli tossine shiga-like 1+2 (stx1 & stx2), geni: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Escherichia coli Stx1+Stx2 toksyny stx1+stx2 geny: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Geny stx1 i stx2 kodujące toksyny Stx1 i Stx2 Escherichia coli Identyfikacja genów stx1 i stx2 kodujących toksyny Shiga Stx1 i Stx2 u Escherichia coli |
| zh-CN | Chinese (China) | 大肠埃希菌 stx1+stx2 毒素 stx1+stx2 基因: Synonyms: E coli; |
82199-1 Salmonella enterica+bongori DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Salmonella enterica and bongori DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay cannot differentiate between the two Salmonella species. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP217212-2 Salmonella enterica+bongori
Salmonella are gram-negative, flagellated, facultative intracellular, anaerobic bacilli with O, H and Vi surface antigens. Once ingested, Salmonella survives the gastric acid barrier and penetrates the epithelial cells of the small and large intestines. The invasion of the epithelial cells stimulates the release of cytokines and a subsequent inflammatory response leading to diarrhea and possible ulceration of the mucosa.[NCBI Books: 8435] Antibodies to Salmonella are the body's defense when the bacteria is outside of its host cell which occurs at the initial infection and when the bacillus moves from cell to cell. There is a 10 minute window of opportunity when the Salmonella bacillus leaves the macrophage to invade another. During that time, antibodies and complement work to eradicate the bacilli, but some of the extracellular bacilli will evade attack and enter another host cell. Studies have shown that vaccines play an important role in the fight against typhoid fever. PMID: 25566248 There are two species of Salmonella: S. enterica and S. bongori. These species can be further subclassified into subspecies and serovars.
Veterinary Medicine:
Salmonella infection is most often caused by the serovars Salmonella choleraesuis, and Salmonella typhimurium and less often by Salmonella derby. Infected pigs can be asymptomatic and become carriers of S. choleraesius. Typically, the bacteria survive in the mesenteric lymph nodes that drain into the intestines, and are not shed in the feces unless the pig is under stress. The carrier state lasts for weeks to months and is self-limiting. Severe infection with S. choleraesius can be serious starting out as septicemia and progressing to pneumonia and enteritis. The infection can spread to various tissues including to the central nervous system leading to meningitis and to the joints where it manifests as arthritis. Severe infections with S. choleraesius occurs at any age, but most often in pigs 12-14 weeks of age.http://www.thepigsite.com/pighealth/article/357/salmonellosis/
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Salmonella enterica+bongori DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1270
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Salmonella enterica+bongori DNA: |
| de-DE | German (Germany) | Salmonella enterica+bongori DNA: |
| el-GR | Greek (Greece) | Βακτήριο Salmonella enterica+bongori (Σαλμονέλλα) DNA: Synonyms: DNA MICRO Ord PrThr Pt Salmonella enterica (Σαλμονέλλα) Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Βακτήριο Salmonella enterica+bongori (Σαλμονέλλα) Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Salmonella enterica+bongi ADN: |
| es-MX | Spanish (Mexico) | Salmonella enterica + ADN bongori: |
| fr-FR | French (France) | Salmonella enterica+bongori ADN: |
| it-IT | Italian (Italy) | Salmonella enterica+bongori DNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Salmonella enterica+bongori DNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Kwas deoksyrybonukleinowy |
| zh-CN | Chinese (China) | 肠道沙门菌+邦戈尔沙门菌 DNA: Synonyms: 依次型; |
82197-5 Clostridioides difficile toxin A+B tcdA+tcdB genes [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Clostridium difficile toxin A (tcdA) and B (tcdB) genes in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between C. difficile toxin A and B genes. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP204848-8 Clostridioides difficile toxin A+B tcdA+tcdB genes
Clostridium difficile toxin's A and B are encoded by the tcdA and tcdB genes, respectively. PMID: 20664812 They share similar molecular characteristics with comparable sizes (308 kD for tcdA and 269 for tcdB) and 63% homology in their amino acid sequences. PMID: 9312171 TcdA and tcdB are expressed in response to environmental stresses, such as antibiotics.[ PMID 15831824] Nucleic acid sequences within these genes are targeted to confirm the presence of C. difficile toxins and diagnose the cause of diarrhea, abdominal pain, fever, nausea and other toxin-producing symptoms.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Clostridioides difficile toxin A+B tcdA+tcdB genes
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Change Reason
- Updated Component from "Clostridium difficile toxin A+B (tcdA+tcdB) genes" based on the current LOINC naming model for assays that detect specific bacteria and viral genes; Updated genus name from Clostridium to Clostridioides based on current (2019) accepted nomenclature for this genus [PMID:27370902].
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1430
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Clostridioides difficile toxin A+B geny tcdA+tcdB: |
| el-GR | Greek (Greece) | Γονίδια tcdA+tcdB τοξίνης Α+Β του Clostridioides difficile: Synonyms: A A,B B Clostridioides difficile MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδια tcdA+tcdB τοξίνης Α+Β του Clostridioides difficile Κόπρανα Τοξίνη Α του Clostridioides difficile Τοξίνη Α+Β του Clostridioides difficile Τοξίνη του Clostridioides difficile Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Gen de la toxina del Clostridium difficile A+B (tcdA+tcdB): |
| es-MX | Spanish (Mexico) | Toxina de Clostridioides difficile A + B genes tcdA + tcdB: |
| fr-FR | French (France) | Clostridioides difficile toxines A+B gènes tcdA+tcdB: |
| it-IT | Italian (Italy) | Clostridium Difficile (tcdA+tcdB), geni tossine A+B: Synonyms: Amplificazione target non basata su sonda Geni delle tossine A+B del Clostridium Difficile ( Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Tossina A di Clostridium difficile Tossina A+B di Clostridium difficile Tossina di Clostridium difficile |
| pl-PL | Polish (Poland) | Clostridioides difficile toksyny A+B tcdA+tcdB geny: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Geny tcdA i tcdB kodujące toksyny A i B Clostridioides difficile |
| zh-CN | Chinese (China) | 艰难梭菌毒素 A+B tcdA+tcdB 基因: Synonyms: A 型 A,B 型; |
82196-7 Campylobacter coli+jejuni+upsaliensis DNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in Campylobacter coli, C. jejuni, and C. upsaliensis DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between the three species. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal panel (GI) v2.1.
Part Descriptions
LP212408-1 Campylobacter coli+jejuni+upsaliensis
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Wikipedia
LP99310-2 Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.https://www.cdc.gov/campylobacter/faq.html
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Campylobacter coli+jejuni+upsaliensis DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1269
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Campylobacter coli+jejuni+upsaliensis DNA: |
| de-DE | German (Germany) | Campylobacter coli+jejuni+upsaliensis DNA: |
| el-GR | Greek (Greece) | Campylobacter coli+jejuni+upsaliensis (Καμπυλοβακτηρίδια) DNA: Synonyms: Campylobacter coli+jejuni+upsaliensis (Καμπυλοβακτηρίδια) DNA MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Βακτήριο Campylobacter coli Βακτήριο Campylobacter coli+jejuni (Καμπυλοβακτηρίδιο) Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Campylobacter coli+jejuni+upsaliensis ADN: |
| es-MX | Spanish (Mexico) | Campylobacter coli + jejuni + ADN de upsaliensis: |
| fr-FR | French (France) | Campylobacter coli+Campylobacter jejuni+Campylobacter upsaliensis ADN: |
| it-IT | Italian (Italy) | Campylobacter coli+jejuni+upsaliensis DNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Campylobacter coli+jejuni+upsaliensis DNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Kwas deoksyrybonukleinowy |
| zh-CN | Chinese (China) | 结肠弯曲菌+空肠弯曲菌+乌普萨拉弯曲菌 DNA: Synonyms: 依次型; |
82211-4 Norovirus genogroup I+II RNA [Presence] in Stool by NAA with non-probe detection
Term Description
Qualitative detection of nucleic acid sequences in the Norovirus genogroup I and II RNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between Norovirus genogroups I and II. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Part Descriptions
LP204849-6 Norovirus genogroup I+II
Norovirus (NV) is a non-enveloped, single-stranded RNA virus that belongs to the Caliciviridae family. It was previously known as the 'Norwalk-like virus'. Of the six known genogroups of NV, only three are known to infect humans and include GI, GII, and GIV. Within these three genogroups 25 genotypes have been discovered, which is why people can be infected multiple times throughout their lives. Infection with NV causes inflammation of the stomach and intestines which leads to non-bloody diarrhea, vomiting, nausea, stomach pain, fever, headache, and body aches. Symptoms persist for 1-3 days, but NV can be found in stool samples of infected people for up to two weeks after symptoms subside. The virus is highly contagious and is transmitted by the fecal-oral route, by contact with infected people, and by contact with contaminated surfaces or substances. NV is the primary cause of food-related illness in the United States. The most common genotype of NV that is responsible for outbreaks since 2002 is GII.4. NV spreads quickly in closed spaces such as daycare centers, nursing homes, schools, and cruise ships. Diagnostic tests for NV include those that detect the viral RNA or a viral antigen in stool.https://www.cdc.gov/norovirus/preventing-infection.html
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Norovirus genogroup I+II RNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 1263
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 114501-0 | Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool |
| 114488-0 | Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection |
| 82195-9 | Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Norovirus genoskupina I+II RNA: |
| de-DE | German (Germany) | Norovirus Genotypgruppe I+II RNA: |
| el-GR | Greek (Greece) | Γονιδιακή ομάδα I+II Νοροϊού RNA: Synonyms: I MICRO Ord PrThr Pt RNA Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονιδιακή ομάδα I Νοροϊού Γονιδιακή ομάδα I+II Νοροϊού Γονιδιακή ομάδα Νοροϊού I & |
| es-ES | Spanish (Spain) | Genogrupos I+II de Norovirus RNA: |
| es-MX | Spanish (Mexico) | ARN del genogrupo I + II de norovirus: |
| fr-FR | French (France) | Norvovirus I+II ARN: |
| it-IT | Italian (Italy) | Norovirus genogroup I+II RNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Norowirus genogrupa I+II RNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Genogrupa I norowirusa; |
| zh-CN | Chinese (China) | 诺如病毒基因群 I+II RNA: Synonyms: I 型 依次型; |