88116-9
Escherichia coli gene panel - Specimen by NAA with probe detection
Active
87402-4 Escherichia coli aidA-I gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262455-1 Escherichia coli aidA-I gene
Escherichia coli (EC) is a gram-negative, flagellated, rod-shaped bacterium. [https://vetmed.iastate.edu/vdpam/FSVD/swine/index-diseases/colibacillosis] There are six classes of EC that cause diarrhea, one of which is the diffusely adhering E. coli (DAEC) class. Within the DAEC class is a class of strains of EC that expresses an adhesin involved in diffuse adherence (AIDA-I) which is encoded by the aidA-I gene. The AIDA-I protein is a multifunctional autotransporter protein that regulates the aggregation of bacteria and formation of biofilm. PMID: 17933890
Veterinary Medicine:
The Strains of EC that possess the aidA-I gene can infect swine and cause edema disease and postweaning diarrhea (PWD), both of which have significant negative economic impacts on farms across the world. PMID: 17933890
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli aidA-I gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC aidA-I gene Islt Ql NAA+probe
- Display Name
- E. coli aidA-I gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli aidA-I gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Gen aidA-I Escherichia coli: |
| es-MX | Spanish (Mexico) | Escherichia coli gen aidA-I: |
| fr-FR | French (France) | Escherichia coli aidA-I gène: |
| it-IT | Italian (Italy) | Escherichia coli gene aidA-I: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| zh-CN | Chinese (China) | 大肠埃希菌 aidA-I 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
63423-8 Escherichia coli eaeA gene [Presence] in Specimen by NAA with probe detection
Part Descriptions
LP262452-8 Escherichia coli eaeA gene
The gene that encodes intimin is the eaeA gene (E. coli attaching-effacing gene). PMID: 7648523 Porcine enteropathogenic E. coli (PEPEC) is a non-enterotoxigenic strain of E. coli that causes postweaning diarrhea (PWD). PEPEC attaches to intestinal epithelial cells in a characteristic pattern called attaching and effacing (A/E). To achieve a close attachment to the enterocytes, PEPEC produces an outer membrane protein called intimin that is critical to induce the distinctive A/E lesion. PMID: 24294249The eaeA gene of Enteropathogenic Escherichia coli (EPEC) plays a role in human infection and virulence. PMID: 8376594
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli eaeA gene
- Property
- PrThr
- Time
- Pt
- System
- XXX
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC eaeA gene Spec Ql NAA+probe
- Display Name
- E. coli eaeA gene NAA+probe Ql (Specimen)
- Consumer Name Alpha Get Info
- Escherichia coli eaeA gene, Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.36
- Last Updated
- Version 2.73
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.Changed Component from 'Bacterial intimin (eaeA) gene' to 'Escherichia coli eaeA gene' because the eaeA gene, which encodes intimin, is specific to E. coli.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 18216
Example Answer List LL956-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 | ||
| Equivocal Copyright http://snomed.info/sct ID:42425007 Equivocal (qualifier value) | LA11885-3 | ||
| Inconclusive Copyright http://snomed.info/sct ID:419984006 Inconclusive (qualifier value) | LA9663-1 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Escherichia coli eaeA-Gen: |
| es-ES | Spanish (Spain) | Gen eaeA Escherichia coli: |
| es-MX | Spanish (Mexico) | Gen eaeA de Escherichia coli: |
| fr-FR | French (France) | Escherichia coli eaeA gène: |
| it-IT | Italian (Italy) | Escherichia coli gene eaeA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli eaeA-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 eaeA 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87318-2 Escherichia coli eaeA gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262452-8 Escherichia coli eaeA gene
The gene that encodes intimin is the eaeA gene (E. coli attaching-effacing gene). PMID: 7648523 Porcine enteropathogenic E. coli (PEPEC) is a non-enterotoxigenic strain of E. coli that causes postweaning diarrhea (PWD). PEPEC attaches to intestinal epithelial cells in a characteristic pattern called attaching and effacing (A/E). To achieve a close attachment to the enterocytes, PEPEC produces an outer membrane protein called intimin that is critical to induce the distinctive A/E lesion. PMID: 24294249The eaeA gene of Enteropathogenic Escherichia coli (EPEC) plays a role in human infection and virulence. PMID: 8376594
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli eaeA gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC eaeA gene Islt Ql NAA+probe
- Display Name
- E. coli eaeA gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli eaeA gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Escherichia coli eaeA-Gen: |
| es-ES | Spanish (Spain) | Gen eaeA Escherichia coli: |
| es-MX | Spanish (Mexico) | Gen eaeA de Escherichia coli: |
| fr-FR | French (France) | Escherichia coli eaeA gène: |
| it-IT | Italian (Italy) | Escherichia coli gene eaeA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli eaeA-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 eaeA 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87951-0 Escherichia coli eaeA gene [Presence] in Stool by NAA with probe detection
Part Descriptions
LP262452-8 Escherichia coli eaeA gene
The gene that encodes intimin is the eaeA gene (E. coli attaching-effacing gene). PMID: 7648523 Porcine enteropathogenic E. coli (PEPEC) is a non-enterotoxigenic strain of E. coli that causes postweaning diarrhea (PWD). PEPEC attaches to intestinal epithelial cells in a characteristic pattern called attaching and effacing (A/E). To achieve a close attachment to the enterocytes, PEPEC produces an outer membrane protein called intimin that is critical to induce the distinctive A/E lesion. PMID: 24294249The eaeA gene of Enteropathogenic Escherichia coli (EPEC) plays a role in human infection and virulence. PMID: 8376594
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli eaeA gene
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC eaeA gene Stl Ql NAA+probe
- Display Name
- E. coli eaeA gene NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Escherichia coli eaeA gene, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Escherichia coli eaeA-Gen: |
| es-MX | Spanish (Mexico) | Gen eaeA de Escherichia coli: |
| es-ES | Spanish (Spain) | Gen eaeA Escherichia coli: |
| fr-FR | French (France) | Escherichia coli eaeA gène: |
| it-IT | Italian (Italy) | Escherichia coli gene eaeA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli eaeA-gen: Synonyms: ontlasting; |
| zh-CN | Chinese (China) | 大肠埃希菌 eaeA 基因: Synonyms: E coli; |
87370-3 Escherichia coli fasA gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262456-9 Escherichia coli fasA gene
Escherichia coli (EC) is a gram-negative, flagellated, rod-shaped bacterium that is composed of a stable core set of genes and another more fluid set of genes that include the virulence genes. These virulence genes encode heat-stable and heat-labile enterotoxins, Shiga toxin 2e, and fimbria including the F6 (also known as 987P and encoded by the fasA gene [UniProt: P21413]) fimbria and can be transferred laterally between dividing EC. PMID: 7021219[https://vetmed.iastate.edu/vdpam/FSVD/swine/index-diseases/colibacillosis] E. coli infection in pigs causes post-weaning diarrhea (PWD) which leads to watery diarrhea, dehydration, loss of body weight, and occasionally death. EC adheres to the small intestine using adhesin factors and produces one or more exotoxins that induce fluid and electrolyte secretion. PMID: 7648523 The pilus 987P is often present on enterotoxigenic Escherichia coli (ETEC) found in the intestines of neonatal pigs, causing severe diarrheal disease. PMID: 6111559
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli fasA gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC fasA gene Islt Ql NAA+probe
- Display Name
- E. coli fasA gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli fasA gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Gen fasA Escherichia coli: |
| es-MX | Spanish (Mexico) | Gen fasA de Escherichia coli: |
| fr-FR | French (France) | Escherichia coli fasA gène: |
| it-IT | Italian (Italy) | Escherichia coli gene fasA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli enterotoxine-gen stb-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 fasA 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87371-1 Escherichia coli fedF gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262468-4 Escherichia coli fedF gene
The Escherichia coli fedF gene encodes the F18 fimbrial adhesion. Escherichia coli (EC) is a gram-negative, flagellated, rod-shaped bacterium that is composed of a stable core set of genes, and another more fluid set of genes that includes the virulence genes. The virulence genes can be transferred laterally between dividing EC. These virulence genes increase the pathogenicity of EC and encode heat-stable and heat-labile enterotoxins, Shiga toxin 2e, and fimbria, including the F18 fimbria. PMID: 7021219[https://vetmed.iastate.edu/vdpam/FSVD/swine/index-diseases/colibacillosis] E. coli infection in pigs causes post-weaning diarrhea (PWD) which leads to watery diarrhea, dehydration, loss of body weight, and occasionally death. EC adheres to the small intestine using adhesin factors, and produces one or more exotoxins that induce fluid and electrolyte secretion. PMID: 7648523
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli fedF gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC fedF gene Islt Ql NAA+probe
- Display Name
- E. coli fedF gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli fedF gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Gen fedF Escherichia coli: |
| es-MX | Spanish (Mexico) | Gen alimentado por Escherichia coli: |
| fr-FR | French (France) | Escherichia coli fedF gène: |
| it-IT | Italian (Italy) | Escherichia coli gene fedF: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli fasA-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 fedF 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87372-9 Escherichia coli FimF41a gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262464-3 Escherichia coli FimF41a gene
The Escherichia coli (EC) pilus gene FimF41a encodes the F41 fimbria. The F41 fimbria is one of the virulence factors associated with postweaning diarrhea (PWD) only in swine.[https://www.aasv.org/shap/issues/v10n4/v10n4p171.pdf]EC is a gram-negative, flagellated, rod-shaped bacterium that is composed of a stable core set of genes, and another more fluid set of genes that includes the virulence genes. These virulence genes increase the pathogenicity of EC and encode heat-stable and heat-labile enterotoxins, Shiga toxin 2e, and fimbria, including the F41 fimbria. The virulence genes can be transferred laterally between dividing EC. PMID: 7021219[https://vetmed.iastate.edu/vdpam/FSVD/swine/index-diseases/colibacillosis] E. coli infection in pigs causes post-weaning diarrhea (PWD) which leads to watery diarrhea, dehydration, loss of body weight, and occasionally death. EC adheres to the small intestine using adhesin factors, and produces one or more exotoxins that induce fluid and electrolyte secretion. PMID: 7648523
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli FimF41a gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC FimF41a gene Islt Ql NAA+probe
- Display Name
- E. coli FimF41a gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli FimF41a gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Gen FimF41a Escherichia coli: |
| es-MX | Spanish (Mexico) | Gen de Escherichia coli FimF41a: |
| fr-FR | French (France) | Escherichia coli FimF41a gène: |
| it-IT | Italian (Italy) | Escherichia coli gene FimF41a: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli fedF-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 FimF41a 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87375-2 Escherichia coli paa gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262448-6 Escherichia coli paa gene
The Escherichia coli (EC) paa gene encodes the porcine attaching-effacing associated (PAA) protein. PAA helps initiate the early stages of post-weaning diarrhea (PWD). Porcine enteropathogenic E. coli (PEPEC) is a non-enterotoxigenic strain of E. coli that causes PWD. PEPEC attaches to intestinal epithelial cells in a characteristic pattern called attaching and effacing (A/E). To achieve a close attachment to the enterocytes, PEPEC produces an outer membrane protein called intimin that is critical to induce the distinctive A/E lesion. PAA is the protein that assists in the A/E and lesion production of EC. PMID: 24294249[http://www.uniprot.org/uniprot/?query=paa+escherichia+coli&sort=score]
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli paa gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC paa gene Islt Ql NAA+probe
- Display Name
- E. coli paa gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli paa gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Gen paa Escherichia coli: |
| es-MX | Spanish (Mexico) | Gen paa de Escherichia coli: |
| fr-FR | French (France) | Escherichia coli paa gène: |
| it-IT | Italian (Italy) | Escherichia coli gene paa: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli-gen panel: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 paa 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87377-8 Escherichia coli Stx2 toxin stx2 gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262477-5 Escherichia coli Stx2 toxin stx2 gene
The Stx1 toxin A subunit is encoded by the stx1 gene [www.uniprot.org/uniprot/ ?query=stx1+escherichia+coli&sort=score] and the Stx2 toxin A subunit is encoded by the stx2 gene.[UniProt: K0JD26] Stx1a and Stx2a are produced by some serogroups of Escherichia coli (also known as Vero toxins and previously referred to as Shiga-like toxins) are two cytotoxins that cause hemorrhagic colitis (HC) and hemolytic uremic syndrome (HUS). The two toxins produce similar symptoms, but are immunologically unique. Both toxins are composed of a single copy of subunit A and five copies of subunit B. Stx1a and Stx1b induce host cell apoptosis by removing an adenine residue from the 28S rRNA of the 60S ribosome, with RNA-N-glycosidase activity provided by subunit A. The five B subunits bind to the host cell receptor present on endothelial cells. PMID: 25530917 Shigella toxin-producing Escherichia coli (STEC) has become a serious food-borne pathogen. Outbreaks of STEC have been associated with the consumption of pork products resulting in HC and HUS. STEC in swine has been demonstrated to cause edema disease. Epidemiological studies throughout the world have proven that STEC can be harbored and shed by domestic swine. PMID: 24397985
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli Stx2 toxin stx2 gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC stx2 gene Islt Ql NAA+probe
- Display Name
- E. coli stx2 gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli stx2 toxin stx2 gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.64
- Change Reason
- Updated Component from "Escherichia coli stx2 gene" based on the current E. coli nomenclature and LOINC model
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Escherichia coli Stx2 Toxin stx2-Gen: |
| es-ES | Spanish (Spain) | Gen stx2 Escherichia coli: |
| es-MX | Spanish (Mexico) | Escherichia coli Toxina Stx2 Gen stx2: |
| fr-FR | French (France) | Escherichia coli toxine stx2 gène: |
| it-IT | Italian (Italy) | Escherichia coli tossina Stx2, gene stx2: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli Stx2-toxine stx2-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 Stx2 毒素 stx2 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
87380-2 Escherichia coli Stx2e toxin stx2e gene [Presence] in Isolate by NAA with probe detection
Part Descriptions
LP262474-2 Escherichia coli Stx2e toxin stx2e gene
Veterinary Medicine:
The Escherichia coli (EC) stx2e encodes Shiga-like toxin 2e (Stx2e). PMID: 11427031 This toxin is excreted by EC that infects newly weaned pigs and causes edema disease. This EC toxin does not affect humans. The symptoms of edema disease include neurological disorders, hemorrhagic lesions, and is often fatal. Stx2e is made up of an enzymatically active A subunit and five B subunits. The B subunits bind to glycolipid receptors of the host cells. A recently developed neutralizing nanobody has been produced to bind to the B subunits and prevent them from binding to the host cell. This nanobody will likely be used to treat edema disease in pigs in the future. PMID: 25053417
Source: Regenstrief LOINC
Observation Required in Panel
Optional
Fully-Specified Name
- Component
- Escherichia coli Stx2e toxin stx2e gene
- Property
- PrThr
- Time
- Pt
- System
- Isolate
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC stx2e gene Islt Ql NAA+probe
- Display Name
- E. coli stx2e gene NAA+probe Ql (Isol)
- Consumer Name Alpha Get Info
- Escherichia coli stx2e toxin stx2e gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.64
- Change Reason
- Updated Component from "Escherichia coli stx2e gene" based on the current E. coli nomenclature and LOINC model
- Order vs. Observation
- Both
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88116-9 | Escherichia coli gene panel - Specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Escherichia coli Stx2e-Toxin stx2e-Gen: |
| es-ES | Spanish (Spain) | Gen stx2e Escherichia coli: |
| es-MX | Spanish (Mexico) | Escherichia coli toxina Stx2e gen stx2e: |
| fr-FR | French (France) | Escherichia coli toxine stx2e gène: |
| it-IT | Italian (Italy) | Escherichia coli tossina Stx2e, gene stx2e: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli Stx2e-toxine stx2e-gen: Synonyms: probe.amp.tar |
| zh-CN | Chinese (China) | 大肠埃希菌 Stx2e 毒素 stx2e 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.