Version 2.78

82196-7 Campylobacter coli+jejuni+upsaliensis DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Campylobacter coli, C. jejuni, and C. upsaliensis DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between the three species. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP212408-1   Campylobacter coli+jejuni+upsaliensis
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Campylobacter coli+jejuni+upsaliensis DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
C coli+jej+upsa DNA Stl Ql NAA+non-probe
Display Name
C. coli+jejuni+upsaliensis DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Campylobacter coli+jejuni+upsaliensis, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1269

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Campylobacter coli+jejuni+upsaliensis DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Campylobacter coli+jejuni+upsaliensis ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Campylobacter coli + jejuni + ADN de upsaliensis:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Campylobacter coli+Campylobacter jejuni+Campylobacter upsaliensis ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Campylobacter coli+jejuni+upsaliensis DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 结肠弯曲菌+空肠弯曲菌+乌普萨拉弯曲菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 结肠弯曲杆菌;大肠弯曲菌 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌） 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌）+乌普萨拉弯曲菌（乌普萨拉弯曲杆菌） 脱氧核糖核酸探针

82197-5 Clostridioides difficile toxin A+B tcdA+tcdB genes [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Clostridium difficile toxin A (tcdA) and B (tcdB) genes in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between C. difficile toxin A and B genes. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP204848-8   Clostridioides difficile toxin A+B tcdA+tcdB genes
Clostridium difficile toxin's A and B are encoded by the tcdA and tcdB genes, respectively. PMID: 20664812 They share similar molecular characteristics with comparable sizes (308 kD for tcdA and 269 for tcdB) and 63% homology in their amino acid sequences. PMID: 9312171 TcdA and tcdB are expressed in response to environmental stresses, such as antibiotics.[ PMID 15831824] Nucleic acid sequences within these genes are targeted to confirm the presence of C. difficile toxins and diagnose the cause of diarrhea, abdominal pain, fever, nausea and other toxin-producing symptoms. Source: Regenstrief LOINC

Fully-Specified Name

Component
Clostridioides difficile toxin A+B tcdA+tcdB genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
C dif tox tcdA+tcdB Stl Ql NAA+non-probe
Display Name
C. difficile toxin A+B tcdA+tcdB genes NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Clostridioides difficile toxin A+B tcdA+tcdB genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Change Reason
Updated Component from "Clostridium difficile toxin A+B (tcdA+tcdB) genes" based on the current LOINC naming model for assays that detect specific bacteria and viral genes; Updated genus name from Clostridium to Clostridioides based on current (2019) accepted nomenclature for this genus [PMID:27370902].
Order vs. Observation
Both
Common Test Rank Get Info
1430

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Gen de la toxina del Clostridium difficile A+B (tcdA+tcdB):PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Toxina de Clostridioides difficile A + B genes tcdA + tcdB:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Clostridioides difficile toxines A+B tcdA+tcdB gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Clostridium Difficile (tcdA+tcdB), geni tossine A+B:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Geni delle tossine A+B del Clostridium Difficile ( Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Tossina A di Clostridium difficile Tossina A+B di Clostridium difficile Tossina di Clostridium difficile
zh-CN Chinese (China) 艰难梭菌毒素 A+B tcdA+tcdB 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: A 型 A,B 型;AB 型 B 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 分子病理学 - 基因类 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 艰难梭状芽胞杆菌;艰难芽孢梭菌 艰难梭状芽胞杆菌毒素 A;艰难梭状芽胞杆菌毒素 A 型;艰难梭菌毒素 A 型;艰难芽孢梭菌毒素 A;艰难芽孢梭菌毒素 A 型 艰难梭状芽胞杆菌毒素 A+B;艰难梭状芽胞杆菌毒素 A+B 型;艰难梭菌毒素 A+B 型;艰难芽孢梭菌毒素 A+B;艰难芽孢梭菌毒素 A+B 型 艰难梭状芽胞杆菌毒素;艰难芽孢梭菌毒素 艰难梭菌毒素（艰难梭状芽胞杆菌、艰难芽孢梭菌） A+B tcdA+tcdB 基因

82198-3 Plesiomonas shigelloides DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Plesiomonas shigelloides DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP146108-8   Plesiomonas shigelloides
Plesiomonas shigelloides is a Gram-negative, rod-shaped bacterium which has been isolated from freshwater, freshwater fish, shellfish, and from many types of animals. Human exposure to P. shigelloides is likely through contaminated water which has been used for drinking, recreation, or to rinse foods that are eaten without cooking. Not all cases of ingested P. shigelloides result in illness, and the dose needed for clinical symptoms is presumed to be at least a million organisms. Symptomatic disease is usually self-limiting, and is characterized by fever, chills, abdominal pain, nausea, watery diarrhea, and vomiting. Symptoms typically begin 20-24 hours after consumption of contaminated food or water and can last from one day to one week. (http://www.fda.gov/Food/FoodborneIllnessContaminants/CausesOfIllnessBadBugBook/ucm070530.htm) Source: Regenstrief LOINC, FDA: Plesiomonas shigelloides gastroenteritis

Fully-Specified Name

Component
Plesiomonas shigelloides DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
P shigelloides DNA Stl Ql NAA+non-probe
Display Name
P. shigelloides DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Plesiomonas shigelloides, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1349

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Plesiomonas shigelloides DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Plesiomonas shigelloides ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Plesiomonas shigelloides:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Plesiomonas shigelloides ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Plesiomonas shigelloides DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 类志贺毗邻单胞菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 邻单胞菌属;毗邻单胞菌属;类志贺邻单胞菌

82199-1 Salmonella enterica+bongori DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Salmonella enterica and bongori DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay cannot differentiate between the two Salmonella species. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP217212-2   Salmonella enterica+bongori
Salmonella are gram-negative, flagellated, facultative intracellular, anaerobic bacilli with O, H and Vi surface antigens. Once ingested, Salmonella survives the gastric acid barrier and penetrates the epithelial cells of the small and large intestines. The invasion of the epithelial cells stimulates the release of cytokines and a subsequent inflammatory response leading to diarrhea and possible ulceration of the mucosa.[NCBI Books: 8435] Antibodies to Salmonella are the body's defense when the bacteria is outside of its host cell which occurs at the initial infection and when the bacillus moves from cell to cell. There is a 10 minute window of opportunity when the Salmonella bacillus leaves the macrophage to invade another. During that time, antibodies and complement work to eradicate the bacilli, but some of the extracellular bacilli will evade attack and enter another host cell. Studies have shown that vaccines play an important role in the fight against typhoid fever. PMID: 25566248 There are two species of Salmonella: S. enterica and S. bongori. These species can be further subclassified into subspecies and serovars.

Veterinary Medicine:
Salmonella infection is most often caused by the serovars Salmonella choleraesuis, and Salmonella typhimurium and less often by Salmonella derby. Infected pigs can be asymptomatic and become carriers of S. choleraesius. Typically, the bacteria survive in the mesenteric lymph nodes that drain into the intestines, and are not shed in the feces unless the pig is under stress. The carrier state lasts for weeks to months and is self-limiting. Severe infection with S. choleraesius can be serious starting out as septicemia and progressing to pneumonia and enteritis. The infection can spread to various tissues including to the central nervous system leading to meningitis and to the joints where it manifests as arthritis. Severe infections with S. choleraesius occurs at any age, but most often in pigs 12-14 weeks of age.[http://www.thepigsite.com/pighealth/article/357/salmonellosis/] Source: Regenstrief LOINC

Fully-Specified Name

Component
Salmonella enterica+bongori DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
S ent+bong DNA Stl Ql NAA+non-probe
Display Name
S. enterica+bongori DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Salmonella enterica+bongori, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1270

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Salmonella enterica+bongori DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Salmonella enterica+bongi ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Salmonella enterica + ADN bongori:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Salmonella enterica+bongori ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Salmonella enterica+bongori DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 肠道沙门菌+邦戈尔沙门菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 沙门氏菌属 经过扩增的 肠道沙门氏菌;沙门氏菌;肠沙门氏菌;肠沙门菌 肠道沙门菌（肠道沙门氏菌、肠沙门菌、肠沙门氏菌）+邦戈尔沙门菌（邦戈尔沙门氏菌、邦戈尔氏沙门氏菌、邦戈尔氏沙门菌） 脱氧核糖核酸探针

82200-7 Vibrio cholerae+parahaemolyticus+vulnificus DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Vibrio cholerae, V. parahaemolyticus, and V. vulnificus DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not indicate which species has been detected. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP212411-5   Vibrio cholerae+parahaemolyticus+vulnificus
Vibrio is a genus of Gram-negative bacteria associated with gastroenteritis. Pathogenic Vibrio species include V. cholerae (causes cholera), V. parahaemolyticus, and V. vulnificus. Pathogenic species can cause foodborne illness, usually associated with eating undercooked seafood. PMID: 16151093 Source: Regenstrief LOINC

Fully-Specified Name

Component
Vibrio cholerae+parahaemolyticus+vulnificus DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
V chol+para+vul DNA Stl Ql NAA+non-probe
Display Name
V. cholerae+parahaemolyticus+vulnificus DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio cholerae+parahaemolyticus+vulnificus, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1355

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Vibrio cholerae+parahaemolyticus+vulnificus ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Vibrio cholerae + parahaemolyticus + ADN vulnificus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Vibrio cholerae+parahaemolyticus+vulnificus ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Vibrio cholerae+parahaemolyticus+vulnificus DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 霍乱弧菌+副溶血弧菌+创伤弧菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 霍乱 霍乱弧菌+副溶血弧菌（副溶血性弧菌）+创伤弧菌

82201-5 Vibrio cholerae DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Vibrio cholerae DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP16778-0   Vibrio cholerae
Vibrio cholerae (also Kommabacillus) is a gram negative comma-shaped bacterium with a polar flagellum that causes cholera in humans. V. cholerae and other species of the genus Vibrio belong to the gamma subdivision of the Proteobacteria. There are two major biotypes of V. cholerae, classical and El Tor, and numerous serogroups. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

Fully-Specified Name

Component
Vibrio cholerae DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
V cholerae DNA Stl Ql NAA+non-probe
Display Name
V. cholerae DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio cholerae, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1350

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41625-1 Vibrio cholerae

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Vibrio cholerae DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Vibrio cholerae ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Vibrio cholerae:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Vibrion cholérique, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Vibrio cholerae ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Vibrio cholerae DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 霍乱弧菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 霍乱

82202-3 Yersinia enterocolitica DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Yersinia enterocolitica DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP17258-2   Yersinia enterocolitica
A species of the genus Yersinia, isolated from both man and animal. It is a frequent cause of bacterial gastroenteritis in children. Source: National Library of Medicine, MeSH 2006

LP17258-2   Yersinia enterocolitica
Yersinia enterocolitica is a species of gram-negative coccobacillus-shaped bacterium, belonging to the family Enterobacteriaceae. Primarily a zoonotic disease (cattle, deer, pigs, and birds), animals which recover frequently become asymptomatic carriers of the disease.
Yersinia enterocolitica is a heterogeneous group of strains, classified into 6 biogroups, and into more than 57 O serogroups. The human pathogenic strains most frequently isolated worldwide belong to serogroups O:3, O:5,27, O:8 and O:9. The major route of Y. enterocolitica infection is through contaminated foods or causing gastrointestinal infections which are usually self-limiting. PMID: 22019131 Source: Regenstrief LOINC, PMID: 22019131

Fully-Specified Name

Component
Yersinia enterocolitica DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
Y enterocol DNA Stl Ql NAA+non-probe
Display Name
Y. enterocolitica DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Yersinia enterocolitica, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1262

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Yersinia enterocolitica DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Yersinia enterocolitica ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Yersinia enterocolitica:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Yersinia enterocolitica, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Yersinia enterocolitica ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Yersinia enterocolitica DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 小肠结肠炎耶尔森氏菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 小肠结肠炎耶尔森菌 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

80348-6 Escherichia coli enteropathogenic eae gene [Presence] in Stool by NAA with non-probe detection

Term Description

This assay detects the Escherichia coli enteropathogenic eae gene using PCR and melt curve analysis. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP200471-3   Escherichia coli enteropathogenic eae gene
Escherichia coli (EC) is a gram-negative, flagellated, rod-shaped bacterium. [https://vetmed.iastate.edu/vdpam/FSVD/swine/index-diseases/colibacillosis] The human gastrointestinal (GI) tract is colonized by EC within hours of birth. The natural barriers of the GI tract prevent infection by symbiotic EC except when they break down such as in peritonitis. EC occupy the mucous layer of the mammalian colon and is the most numerous anaerobe of the intestinal microflora. Some strains of EC have evolved virulence factors that precipitate serious disease including enteric diarrhea, urinary tract infections, sepsis and meningitis. The intestinal pathogens of EC include six pathotypes defined by the virulence factors they express. These include: enteropathogenic E. coli (EPEC), enterohaemorrhagic E. coli(EHEC), enterotoxigenic E. coli (ETEC), enteroaggregative E. coli (EAEC), enteroinvasive E. coli (EIEC) and diffusely adherent E. coli (DAEC). Uropathogenic EC (UPEC) is the most common EC infection that occurs outside the GI tract. The EC pathotypes that infects extraintestinal locations have been designated ExPEC. The EC pathotypes that infect animals and cause disease include EPEC, EHEC and ETEC.[nature.com/nrmicro/journal/v2/n2/full/nrmicro818.html][vetres.org/articles/vetres/pdf/2006/01/v6008.pdf] Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli enteropathogenic eae gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
EPEC eae gene Stl Ql NAA+non-probe
Display Name
E. coli enteropathogenic eae gene NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enteropathogenic eae gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
3671

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enteropathogen eae-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) gen eae de Escherichia coli enteropatogenica:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Gen eae enteropatógeno de Escherichia coli:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Escherichia coli entéropathogéniques eae gène:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Escherichia coli entéropathogéniques eae gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enteropatogeni gene eae:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda EPEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 大肠埃希菌肠致病型 eae 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）肠致病型（肠致病性、肠道致病性、肠道致病型） eae 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 肠致病性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;EPEC 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

80349-4 Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes [Presence] in Stool by NAA with non-probe detection

Term Description

This assay detects the Escherichia coli enteroaggregative pAA plasmid aggR and aatA genes using PCR and melt curve analysis. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP200468-9   Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes
Enteroaggregative Escherichia coli (EAEC) is a bacteria that causes chronic diarrhea in travelers, children in developing countries, HIV-infected patients, and in farm animals, most commonly piglets and calves. A low-molecular weight, heat-stable, plasmid-encoded enterotoxin known as EAEC heat-stable enterotoxin 1 (EAST1) is produced by some strains of EAEC. EAST1 is encoded by the astA gene. In addition to EAEC, the astA gene has been identified in other diarrheagenic Escherichia coli (EC) pathotypes including enterohemorrhagic E. coli (EHEC), enterotoxigenic E. coli (ETEC), diffusely adherent E. coli (DAEC) and enteropathogenic E. coli (EPEC). PMID: 8385356 PMID: 12003040 Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
EAEC pAA plas aggR+aatA St NAA+non-prb
Display Name
E. coli enteroaggregative pAA plasmid aggR+aatA genes NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
1318

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enteroaggregativ pAA-Plasmid aggR+aatA-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Escherichia coli enteroagregativa plasmido pAA genes aggR+aatA:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Escherichia coli pAA enteroagregativo plásmido aggR + genes aatA:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Escherichia coli entéro-agrégatif pAA plasmide aggR+aatA gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enteroaggregativi Paa Plasmidico aggR+ geni aatA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda EAEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 大肠埃希菌肠集聚型 pAA 质粒 aggR+aatA 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 分子病理学 - 基因类 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）肠集聚型（肠聚集性、肠聚集型、肠凝聚型、肠集聚性、肠道集聚型） pAA 质粒 aggR+aatA 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 肠聚集性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;EAEC 脱氧核糖核酸探针

80351-0 Escherichia coli enterotoxigenic ltA+st1a+st1b genes [Presence] in Stool by NAA with non-probe detection

Term Description

This assay detects the presence of one or more of the Escherichia coli enterotoxigenic ltA, st1a and st1b toxins using PCR and melt curve analysis. The assay does not distinguish between the three toxins. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP200472-1   Escherichia coli enterotoxigenic ltA+st1a+st1b genes
Enterotoxigenic Escherichia coli (ETEC) produces a heat-labile (LT) and a heat-stable (ST) enterotoxin, both of which cause severe diarrhea in both humans and animals. ST is an extracellular toxin which is comprised of a methanol-soluble (STa) toxin and a methanol-insoluble (STb) toxin. The sta gene encodes the STa toxin and the stb gene encodes the STb toxin. [UniProt: Q70Q79]; [UniProt: Q70Q73] STa combines to its enterocyte receptor, guanylate cyclase, which causes intestinal secretion and diarrhea. PMID: 8528070 The STb enterocyte receptor is the protein sulfatide. After STb binds to sulfatide, it is engulfed by the enterocyte. It then activates the pertussis toxin-sensitive G protein which opens the ligand-gated calcium ion channel, allowing an influx of calcium ions. A subsequent secretion of chloride ions, stimulation of arachidonic acid release, and production of prostaglandin E2 and 5-dyroxytryptamine leads to an efflux of water, bicarbonate ions, sodium ions, and chloride ions into the intestinal space, all of which leads to watery diarrhea. PMID: 23716609 Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli enterotoxigenic ltA+st1a+st1b genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
ETEC ltA+st1a+st1b tox St NAA+non-probe
Display Name
E. coli enterotoxigenic ltA+st1a+st1b genes NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enterotoxigenic ltA+st1a+st1b genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
Changed component name to clarify that this assay detects the toxin genes (vs. protein). Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
1353

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enterotoxigen ltA+st1a+st1b-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) toxinas ltA+st1a+st1b de Escherichia coli enterotoxigénica:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Genes enterotoxigénicos ltA + st1a + st1b de Escherichia coli:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Escherichia coli entérotoxinogène ltA+st1a+st1b gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enterotossigeni geni ItA+st1a+st1b:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda ETEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 大肠埃希菌肠产毒素型 ltA+st1a+st1b 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 产肠毒素性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;肠毒性大肠杆菌;肠产毒性大肠杆菌;ETEC 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 分子病理学 - 基因类 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）肠产毒素型（肠产毒素性、产肠毒素性、产肠毒素型、肠毒性、肠毒型、产肠毒性、产肠毒型） ltA+st1a+st1b 基因;肠产毒素型大肠埃希菌 ltA+st1a+st1b 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

82203-1 Escherichia coli Stx1 and Stx2 toxin stx1+stx2 genes [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Escherichia coli shiga-like toxin stx1 and stx2 genes in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between the two toxins. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP204844-7   Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2. Source: LOINC partner 1

Fully-Specified Name

Component
Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
EC stx1+stx2 genes Stl Ql NAA+non-probe
Display Name
E. coli stx1+stx2 genes NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli stx1+Stx2 toxin stx1+stx2 genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Change Reason
Updated Component from "Escherichia coli shiga-like toxin 1+2 (stx1+stx2) genes" based on the current E. coli nomenclature and LOINC naming model for assays that detect specific bacteria and viral genes.
Order vs. Observation
Both
Common Test Rank Get Info
1347

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli Stx1+Stx2-Toxine stx1+stx2-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Genes (stx1+stx2) de la toxina de Escherichia coli shiga 1+2+J8135:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Escherichia coli Stx1 + Stx2 toxina stx1 + genes stx2:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Escherichia coli toxines stx1 + stx2 gènes:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Escherichia coli toxines stx1 + stx2 gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Escherichia coli tossine shiga-like 1+2 (stx1 & stx2), geni:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 大肠埃希菌 stx1+stx2 毒素 stx1+stx2 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 分子病理学 - 基因类 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）志贺样毒素（类志贺毒素、类志贺氏毒素） 1 与 2 stx1 与 stx2 基因;大肠埃希菌 stx1 与 stx2 毒素 stx1 与 stx2 基因;大肠埃希菌志贺样毒素 1 与 2 stx1 与 stx2 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）志贺样毒素（类志贺毒素、类志贺氏毒素） 1+2 stx1+stx2 基因;大肠埃希菌志贺样毒素 1+2 stx1+stx2 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

82204-9 Escherichia coli O157 DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Escherichia coli O157 DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP36684-6   Escherichia coli O157
Escherichia coli O157 is an enterohemorrhagic strain of the bacterium Escherichia coli and an emerging cause of foodborne illness. An estimated 73,000 cases of infection and 61 deaths occur each year in the United States alone, although it is rarer in less industrialized countries. Infection often leads to bloody diarrhea, and occasionally to kidney failure. Most illness has been associated with eating undercooked, contaminated ground beef, although it is also transmitted by person-to-person contact, produce, drinking unpasteurized milk or swimming in or drinking contaminated water. The 2006 United States E. coli outbreak was linked to a large quantity of spinach contaminated with this strain. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Escherichia coli O157 (Wikipedia)

LP36684-6   Escherichia coli O157
A verocytotoxin-producing serogroup belonging to the O subfamily of Escherichia coli which has been shown to cause severe food-borne disease. Recently, a strain from this serogroup, serotype H7 which produces Shiga-like toxins, has been linked to human disease outbreaks resulting from contamination of foods from bovine origin. This serogroup causes hemorrhagic and HEMOLYTIC-UREMIC SYNDROME and predominantly hemorrhagic diarrhea and GASTROENTERITIS in children. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Escherichia coli O157 DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
E coli O157 DNA Stl Ql NAA+non-probe
Display Name
E. coli O157 DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli O157, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
3401

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli O157 DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Escherichia coli O157 ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Escherichia coli O157:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Escherichia coli O157, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Escherichia coli O157 ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Escherichia coli O157 DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 大肠埃希菌 O157 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） O157 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

80350-2 Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with non-probe detection

Term Description

This assay detects the invasion plasmid antigen H (ipaH) gene that is specific to Shigella species and enteroinvasive E. coli (EIEC) using PCR and melt curve analysis. The assay does not distinguish between Shigella and EIEC. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP145956-1   Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
The invasion plasmid antigen H (ipaH) gene is a multicopy gene exclusively found in all Shigella and enteroinvasive E. coli (EIEC). Shigella and EIEC both evolved from nonpathogenic Escherichia coli, and sequencing of multiple housekeeping genes indicates that EIEC is genetically related to Shigella. Shigella causes bacillary dysentery with symptoms including abdominal cramps, nausea, fever and a bloody and mucus diarrhea. By testing for the absence of lysine decarboxylase (LDC) activity and presence of the IpaH gene, Shigella and EIEC can be differentiated from non-enteroinvasive E. coli. PMID: 21901636 Source: Regenstrief LOINC, PMID: 21901636

Fully-Specified Name

Component
Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
Shigella sp+EIEC ipaH St NAA+non-probe
Display Name
Shigella species+EIEC invasion plasmid antigen H ipaH gene NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Shigella Species+EIEC Invasion Plasmid Antigen H IpaH gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
1343

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Shigella species+EIEC-invasion plasmid antigen H (ipaH)-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Gen antígeno H plasmídico invasor bacterial (ipaH):PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Especies de Shigella + gen del antígeno H (ipaH) del plásmido invasor EIEC:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Shigella+Escherichia coli entéroinvasif ipaH gène:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Shigella+Escherichia coli entéroinvasif ipaH gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Specie shigella e Escherichia Coli enteroinvasive antigene H plasmidico di invasione batterica (ipaH), gene:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Gene di antigene H plasmidico di invasione batteri Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 志贺菌+肠侵袭性大肠埃希菌侵袭质粒抗原 H (ipaH) 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: Ag H 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 志贺氏杆菌 志贺氏杆菌属 志贺氏细菌性痢疾 志贺氏菌属 志贺氏菌病 志贺氏菌痢疾 志贺菌 志贺菌属 志贺菌属（志贺菌、志贺氏菌属、志贺氏菌）+EIEC 侵袭质粒抗原 H (ipaH) 基因;细菌侵袭质粒抗原 H (ipaH) 基因;细菌入侵质粒抗原 H (ipaH) 基因;细菌侵袭性质粒抗原 H (ipaH) 基因;invasion plasmid antigen H;ipaH;侵袭性质粒抗原 H;侵袭质粒抗原 H;入侵质粒抗原 H 志贺菌病 志贺菌痢疾 扩增型 扩增性 抗体原 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

82205-6 Cryptosporidium sp DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Cryptosporidium sp DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between different species of cryptosporidium. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP16823-4   Cryptosporidium sp
A genus of coccidian parasites of the family cryptosporidiidae, found in the intestinal epithelium of many vertebrates including humans. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Cryptosporidium sp DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
Cryptosp DNA Stl Ql NAA+non-probe
Display Name
Cryptosporidium sp DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Cryptosporidium sp, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1356

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41646-7 Cryptosporidium

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Cryptosporidium sp DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Cryptosporidium especie ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Cryptosporidium sp:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Cryptosporidium sp, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Cryptosporidium ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Cryptosporidium sp DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
uk-UA Ukrainian (Ukraine) Cryptosporidium sp ДНК:Наявність або Поріг:МоментЧасу:Кал:Порядково:Детекція без зонда.цільова аміпліфікація НК
Synonyms: 3 Self-Sustaining Sequence Replication; 3SR SR; Amplif; Amplification; Amplified; Bowel movement; Crypt; Crypto; Cryptosporidiosis; Deoxyribonucleic acid; DNA NUCLEIC ACID PROBE; DNA probe; Faecal; Faeces; Fecal; Feces; Gastro; Gastroenterology; GI; ID; Infectious Disease; InfectiousDisease; LAT; LCR; Ligase chain reaction; Ligation-activated transcription; Microbiology; NAA+non-probe; NAA+probe; NAAT; NASBA; Nucleic acid sequence based analysis; Ordinal; PCR; Point in time; Polymerase chain reaction; PR; Probe amp; Probe with ampification; Probe with target amplification; QBR; QL; Qual; Qualitative; Random; Screen; SDA; species; spp; Stl; Stool = Fecal; Strand Displacement Amplification; TMA; Transcription mediated amplification
zh-CN Chinese (China) 隐孢子虫属单个未知种 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 物种 生物种 经过扩增的 脱氧核糖核酸探针 隐孢子虫;隐孢子虫单个未知种 隐孢子虫属 隐孢子虫病 隐孢球虫 隐孢球虫病

82206-4 Cyclospora cayetanensis DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Cyclospora cayetanensis DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP14898-8   Cyclospora cayetanensis
Cyclospora cayetanensis is a protozoan that causes disease in humans, and perhaps other primates. It has been linked in the United States from fecally-contaminated imported raspberries and was virtually unknown before about 1990, but has been on the rise since. The health risk associated with the disease is usually confined to adult foreigners visiting endemic regions and acquiring the infection: this is why C. cayetanensis has been labeled as causing "traveler's diarrhea."

This species was placed in the Cyclospora genus because of the spherical shape of its sporocysts Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

Fully-Specified Name

Component
Cyclospora cayetanensis DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
C cayetanensis DNA Stl Ql NAA+non-probe
Display Name
C. cayetanensis DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Cyclospora cayetanensis, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1351

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41642-6 Cyclospora

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Cyclospora cayetanenis ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Cyclospora cayetanensis:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Cyclospora cayetanensis, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Cyclospora cayetanensis ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Cyclospora cayetanensis DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Cyclospora cayetanenis Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
uk-UA Ukrainian (Ukraine) Cyclospora cayetanensis ДНК:Наявність або Поріг:МоментЧасу:Кал:Порядково:Детекція без зонда.цільова аміпліфікація НК
Synonyms: 3 Self-Sustaining Sequence Replication; 3SR SR; Amplif; Amplification; Amplified; Bowel movement; C cayetanenis; C cayetanensis; C cyaetinesus; Cyclo; Cyclosporiasis; Deoxyribonucleic acid; DNA NUCLEIC ACID PROBE; DNA probe; Faecal; Faeces; Fecal; Feces; ID; Infectious Disease; InfectiousDisease; LAT; LCR; Ligase chain reaction; Ligation-activated transcription; Microbiology; NAA+non-probe; NAA+probe; NAAT; NASBA; Nucleic acid sequence based analysis; Ordinal; PCR; Point in time; Polymerase chain reaction; PR; Probe amp; Probe with ampification; Probe with target amplification; QBR; QL; Qual; Qualitative; Random; Screen; SDA; Stl; Stool = Fecal; Strand Displacement Amplification; TMA; Transcription mediated amplification
zh-CN Chinese (China) 卡晏圆孢子虫 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: Cyclospora cayetanensis (圆孢子虫) DNA Cyclospora cayetanensis;圆孢子虫;卡晏圆孢子虫;卡晏环孢子球虫;卡晏环孢子虫;卡耶潭圆孢球虫;卡耶塔圆孢子虫 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 圆孢子虫病 圆孢球虫 圆孢球虫病 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 环孢子虫 环孢子虫病 环孢属 环孢菌 环孢菌病 环孢虫 经过扩增的 脱氧核糖核酸探针

82207-2 Entamoeba histolytica DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Entamoeba histolytica DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP16698-0   Entamoeba histolytica
Entamoeba histolytica is an anaerobic parasitic eukaryote protozoan, part of the genus Entamoeba. It infects predominantly humans and other primates. Diverse mammals such as dogs and cats can become infected but usually do not shed cysts (the environmental survival form of the organism) with their feces, thus do not contribute significantly to transmission. The active (trophozoite) stage exists only in the host and in fresh feces; cysts survive outside the host in water and soils and on foods, especially under moist conditions on the latter. When swallowed they cause infections by excysting (to the trophozoite stage) in the digestive tract. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Entamoeba histolytica (Wikipedia)

LP16698-0   Entamoeba histolytica
A species of parasitic protozoa causing ENTAMOEBIASIS and amebic dysentery (DYSENTERY, AMEBIC). Characteristics include a single nucleus containing a small central karyosome and peripheral chromatin that is finely and regularly beaded. Source: National Library of Medicine, MeSH 2006

LP21259-4   Entamoeba
A genus of ameboid protozoa characterized by the presence of beaded chromatin on the inner surface of the nuclear membrane. Its organisms are parasitic in invertebrates and vertebrates, including humans. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Entamoeba histolytica DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
E histolyt DNA Stl Ql NAA+non-probe
Display Name
E. histolytica DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Entamoeba histolytica, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1354

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Entamoeba histolytica DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Entamoeba histolytica ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Entamoeba histolytica:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Entamoeba histolytica, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Entamoeba histolytica ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Entamoeba histolytica DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
uk-UA Ukrainian (Ukraine) Entamoeba histolytica ДНК:Наявність або Поріг:МоментЧасу:Кал:Порядково:Детекція без зонда.цільова аміпліфікація НК
Synonyms: 3 Self-Sustaining Sequence Replication; 3SR SR; Ameba; Amebiasis; Amebic; Amoeba; Amplif; Amplification; Amplified; Bowel movement; Deoxyribonucleic acid; DNA NUCLEIC ACID PROBE; DNA probe; E histolyt; E histolytica; Faecal; Faeces; Fecal; Feces; ID; Infectious Disease; InfectiousDisease; LAT; LCR; Ligase chain reaction; Ligation-activated transcription; Microbiology; NAA+non-probe; NAA+probe; NAAT; NASBA; Nucleic acid sequence based analysis; Ordinal; PCR; Point in time; Polymerase chain reaction; PR; Probe amp; Probe with ampification; Probe with target amplification; QBR; QL; Qual; Qualitative; Random; Screen; SDA; Stl; Stool = Fecal; Strand Displacement Amplification; TMA; Transcription mediated amplification
zh-CN Chinese (China) 溶组织内阿米巴 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 内变形虫 内变形虫属 内阿米巴属 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 变形虫 变形虫属 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 溶组织肠阿米巴 DNA 溶组织肠阿米巴;变形虫病;阿米巴病 经过扩增的 肠阿米巴属 脱氧核糖核酸探针 阿米巴

82208-0 Giardia lamblia DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Giardia lamblia DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP14122-3   Giardia lamblia
Giardia lamblia, or Giardia intestinalis, is a pear-shaped flagellated parasitic protozoa that attaches to the intestinal epithelium and feeds on mucous secretions. The organism is often non-pathogenic and found in completely asymptomatic individuals. Individuals with giardiasis, a colonization of the G. lamblia in the small intestines, can develop diarrhea and abdominal pain, occasionally vomiting and fever. Source: Regenstrief LOINC

Fully-Specified Name

Component
Giardia lamblia DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
G lamblia DNA Stl Ql NAA+non-probe
Display Name
G. lamblia DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Giardia lamblia, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1357

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41616-0 Giardia lamblia

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Giardia lamblia DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Giardia lamblia ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ADN de Giardia lamblia:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Giardia lamblia, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Giardia lamblia ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Giardia lamblia DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
uk-UA Ukrainian (Ukraine) Giardia lamblia ДНК:Наявність або Поріг:МоментЧасу:Кал:Порядково:Детекція без зонда.цільова аміпліфікація НК
Synonyms: 3 Self-Sustaining Sequence Replication; 3SR SR; Amplif; Amplification; Amplified; Beaver fever; Bowel movement; Deoxyribonucleic acid; DNA NUCLEIC ACID PROBE; DNA probe; Faecal; Faeces; Fecal; Feces; G duodenalis; G intestinalis; G lamblia; Giardiasis; ID; Infectious Disease; InfectiousDisease; Lamblia intestinalis; LAT; LCR; Ligase chain reaction; Ligation-activated transcription; Microbiology; NAA+non-probe; NAA+probe; NAAT; NASBA; Nucleic acid sequence based analysis; Ordinal; PCR; Point in time; Polymerase chain reaction; PR; Probe amp; Probe with ampification; Probe with target amplification; QBR; QL; Qual; Qualitative; Random; Screen; SDA; Stl; Stool = Fecal; Strand Displacement Amplification; TMA; Transcription mediated amplification
zh-CN Chinese (China) 蓝氏贾第鞭毛虫 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 梨形鞭毛虫 梨形鞭毛虫属 梨形鞭毛虫病 经过扩增的 脱氧核糖核酸探针 蓝氏贾第虫 贾第虫 贾第虫病 贾第鞭毛虫属 贾第鞭毛虫病

82209-8 Adenovirus 40+41 DNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of targeted nucleic acids in the Adenovirus serotypes 40 and 41 DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Adenovirus 40+41 DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
AdV 40+41 DNA Stl Ql NAA+non-probe
Display Name
Adenovirus 40+41 DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Adenovirus 40+41, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Change Reason
Removed species letter and parentheses in Component based on current LOINC model for naming Adenovirus serotypes.
Order vs. Observation
Both
Common Test Rank Get Info
1352

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Adenovirus 40+41 DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Adenovirus 40+41 ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Adenovirus 40 + 41 ADN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-CA French (Canada) Adénovirus 40+41, ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FR French (France) Adénovirus 40+41 ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Adenovirus 40+41 DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Ritirato Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 腺病毒 40+41 型 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: AdV;AV;腙样病毒;腺样病毒 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 腺病毒（AdV、AV、腙样病毒、腺样病毒） 40+41 型;HAdV 40+41;HAdV40+41;肠道腺病毒;腺病毒 40+41

82210-6 Astrovirus subtypes 1-8 RNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Astrovirus subtypes 1-8 RNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay is not predicted to detect newly-identified astroviruses of the MLB and VA clades. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP217210-6   Astrovirus subtypes 1-8
A genus of small, circular RNA viruses in the family ASTROVIRIDAE. They cause gastroenteritis and are found in the stools of several vertebrates including humans. Transmission is by the fecal-oral route. There are at least eight human serotypes and the type species is Human astrovirus 1. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Astrovirus subtypes 1-8 RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
Astro typ 1-8 RNA Stl Ql NAA+non-probe
Display Name
Astrovirus subtypes 1-8 RNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Astrovirus subtypes 1-8, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1346

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Astrovirus Subtypen 1-8 RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Subtipos 1-8 de Astrovirus RNA:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Subtipos de astrovirus 1-8 ARN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Astrovirus sous-type 1-8 ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Astrovirus sottotipi 1-8 RNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 星状病毒亚型 1-8 RNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: Ⅰ I 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 星形病毒;AstV 星状病毒 1-8 亚型;AstV 亚型 1-8;AstV 1-8 亚型;星状病毒 1～8 亚型;星状病毒亚型 1～8 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针

82211-4 Norovirus genogroup I+II RNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Norovirus genogroup I and II RNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay does not differentiate between Norovirus genogroups I and II. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP204849-6   Norovirus genogroup I+II
Norovirus (NV) is a non-enveloped, single-stranded RNA virus that belongs to the Caliciviridae family. It was previously known as the 'Norwalk-like virus'. Of the six known genogroups of NV, only three are known to infect humans and include GI, GII, and GIV. Within these three genogroups 25 genotypes have been discovered, which is why people can be infected multiple times throughout their lives. Infection with NV causes inflammation of the stomach and intestines which leads to non-bloody diarrhea, vomiting, nausea, stomach pain, fever, headache, and body aches. Symptoms persist for 1-3 days, but NV can be found in stool samples of infected people for up to two weeks after symptoms subside. The virus is highly contagious and is transmitted by the fecal-oral route, by contact with infected people, and by contact with contaminated surfaces or substances. NV is the primary cause of food-related illness in the United States. The most common genotype of NV that is responsible for outbreaks since 2002 is GII.4. NV spreads quickly in closed spaces such as daycare centers, nursing homes, schools, and cruise ships. Diagnostic tests for NV include those that detect the viral RNA or a viral antigen in stool.[https://www.cdc.gov/norovirus/preventing-infection.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Norovirus genogroup I+II RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
Norovirus GI+II RNA Stl Ql NAA+non-probe
Display Name
Norovirus genogroup I+II RNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Norovirus Genogroup I+II, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1263

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Norovirus Genotypgruppe I+II RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Genogrupos I+II de Norovirus RNA:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ARN del genogrupo I + II de norovirus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Norovirus I+II ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Norovirus genogroup I+II RNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 诺如病毒基因群 I+II RNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: I 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I 与 II;诺如病毒基因群 I 型与 II 型 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I;诺如病毒;诺罗病毒;诺瓦克病毒;诺如病毒 I 型;诺如病毒 1 型;诺如病毒 I 基因群 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I+II 诺瓦克病毒;诺罗病毒

82212-2 Rotavirus A RNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Rotavirus A RNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Part Descriptions

LP204843-9   Rotavirus A
Rotaviruses are non-enveloped, multilayered, icosahedral viruses composed of an outer layer, an inner layer, and a core. After the immature, double-layered virus is assembled in the host cell cytoplasm, they bud across the endoplasmic reticulum (ER) and acquire a temporary membrane that has on its surface the ER resident viral glycoproteins NSP4, VP4 and VP7. The virus loses its temporary membrane and the NSP4 glycoprotein as it moves toward the center of the ER cisternae. The VP4 and VP7 proteins are pushed to the outermost membrane layer and become the mature triple-layered rotavirus. The outer capsid glycoprotein VP7 is believed to be important for the attachment to and entry in the host cell. After it enters the host cell, the VP7 glycoprotein is lost. [UniProt: Q89865] When the host cell lyses, the mature virus are released. There are eight groups of rotavirus, A through H. Groups A, B, C, and H are associated with an acute gastroenteritis and are found in humans and animals. Groups D, E, F, and G are found only in animals. Rotavirus A (RVA) are the cause an acute gastroenteritis in children and animals. RVA is the most common infectious organism to cause severe gastroenteritis in children less than 3 years of age. It is estimated that 95% of children worldwide between the ages of 3 and 5 will become infected with RVA. Approximately 8000 children under 5 years of age in Latin America and the Caribbean die of acute enteritis caused by RVA. PMID: 2556635[http://www.sciencedirect.com/science/article/pii/S004268220700400X?via%3Dihub] PMID: 27462899 Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
RVA RNA Stl Ql NAA+non-probe
Display Name
Rotavirus A RNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Change Reason
Abbreviated "Rotavirus A" to "RVA" in the Shortname for consistency across terms.
Order vs. Observation
Both
Common Test Rank Get Info
1264

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
es-ES Spanish (Spain) Rotavirus A RNA:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) ARN del rotavirus A:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Rotavirus A ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Rotavirus A RNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 轮状病毒 A 组 RNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 轮状病毒（ROTAV、RV） A 组;A 组轮状病毒

82213-0 Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Sapovirus genogroups I+II+IV+V RNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay detects but cannot differentiate between the genogroups. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Sapovirus genogroups I+II+IV+V RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
Sapo I+II+IV+V RNA Stl Ql NAA+non-probe
Display Name
Sapovirus genogroups I+II+IV+V RNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Sapovirus Genogroups I+II+IV+V, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
1344

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Genogrupos I+II+IV+V de Sapovirus RNA:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MX Spanish (Mexico) Genogrupos de sapovirus I + II + IV + V ARN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FR French (France) Sapovirus I+II+IV+V ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-IT Italian (Italy) Sapovirus genogruppi I+II+IV+V RNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 札如病毒基因群 I+II+IV+V RNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: I 型 Sapovirus;SV;人类杯状病毒;Human Calicivirus;HuCV;札幌样病毒;Sapporo-like Virus;SLV V 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 札如病毒（SV、札幌样病毒、SLV、人类杯状病毒、HuCV）基因群 I+II+IV 札如病毒（SV、札幌样病毒、SLV、人类杯状病毒、HuCV）基因群 I+II+IV+V 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针